Browse Element(s) Details


Os.7065.1.S1_at

Description gb:AK102624.1
DB_XREF= gi:32987833
TID=Os.7065.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099I03, full insert sequence.
FL= gb:AK102624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4224011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7065.1.S1_at--784--9631Chr02:25404605..25404629 (25 bp)
TCAGGCGATGAACACCGACGACTTC
LOC_Os02g42240
Os.7065.1.S1_at--403--5791Chr02:25404621..25404645 (25 bp)
GACGACTTCACGGACAAGACCATGG
LOC_Os02g42240
Os.7065.1.S1_at--669--8792Chr09:14585667..14586086 (25 bp)
TGTTCTTGCTGCTACGATTGCTGCT
NONE
Os.7065.1.S1_at--615--6591Chr02:25404764..25404788 (25 bp)
GATTGCTGCTCCAGCATCCTGGATT
LOC_Os02g42240
Os.7065.1.S1_at--1111--1731Chr02:25404821..25404845 (25 bp)
ACCTTGCAGAAACTTCATGGGTGCT
LOC_Os02g42240
Os.7065.1.S1_at--806--7151Chr02:25404865..25404889 (25 bp)
GTCTCGGTGATATATTTTGGGCTGT
LOC_Os02g42240
Os.7065.1.S1_at--142--9551Chr02:25404904..25404928 (25 bp)
TCTTAGATTAATTCTTCCTCCCTTG
LOC_Os02g42240
Os.7065.1.S1_at--370--10671Chr02:25404918..25404942 (25 bp)
TTCCTCCCTTGCGTTGTAACTGAGA
LOC_Os02g42240
Os.7065.1.S1_at--708--7051Chr02:25404933..25404957 (25 bp)
GTAACTGAGATTTGTGCGTCACTTT
LOC_Os02g42240
Os.7065.1.S1_at--1074--3111Chr02:25404977..25405001 (25 bp)
AATTTGTGCACTATCAAGTTCTGAA
LOC_Os02g42240
Os.7065.1.S1_at--558--8971Chr02:25404998..25405022 (25 bp)
TGAAACATCGATTTGTCTTCCAGCC
LOC_Os02g42240
Target Sequence 
TCAGGCGATGAACACCGACGACTTCACGGACAAGACCATGGATGAATGTTGTTCTTGCTGCTACGATTGCTGCTCCAGCA
TCCTGGATTTCCTCTGCTGTTCTTGATGCTGCCCCTCGTCAACCTTGCAGAAACTTCATGGGTGCTGACGATGAGTGAAT
CAGAAGTCTCGGTGATATATTTTGGGCTGTACAAGTTATTGAATTCTTAGATTAATTCTTCCTCCCTTGCGTTGTAACTG
AGATTTGTGCGTCACTTTATGGATGATTTTGGGAGGAAATTTGTGCACTATCAAGTTCTGAAACATCGATTTGTCTTCCA
GCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis