Browse Element(s) Details


Os.17969.1.S1_at

Description gb:AK120559.1
DB_XREF= gi:37990182
TID=Os.17969.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131N16, full insert sequence.
FL= gb:AK120559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4220011/11transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42160OsAffx.21096.2.S1_x_at1/112+25350877..25354142Protein kinase domain containing protein
LOC_Os02g42170NANA2+25358765..25359798lipase class 3 family protein, putative, expressed
LOC_Os02g42180NANA2+25361071..25365896retrotransposon protein, putative, unclassified, expressed
LOC_Os02g42190OsAffx.21096.2.S1_x_at1/112+25368823..25372024Protein kinase domain containing protein
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17969.1.S1_at--749--2691Chr02:25375732..25375756 (25 bp)
AAGCTCTCCTCAGATACGCTATCAA
LOC_Os02g42200
Os.17969.1.S1_at--517--1831Chr02:25375717..25375741 (25 bp)
ACGCTATCAAAGTCCTGTAGGTCAG
LOC_Os02g42200
Os.17969.1.S1_at--869--5511Chr02:25375693..25375717 (25 bp)
GAAAAGGTCGTTTACTCCAGCACAA
LOC_Os02g42200
Os.17969.1.S1_at--1043--231Chr02:25375626..25375650 (25 bp)
ATATATCACCCAATATTGCCATGGA
LOC_Os02g42200
Os.17969.1.S1_at--773--5211Chr02:25375582..25375606 (25 bp)
GAATAACACTGTCTACGAAGGTCTA
LOC_Os02g42200
Os.17969.1.S1_at--830--831Chr02:25374660..25374680 (21 bp)
ATGGATGTGTTGAACCCGCAGACCT
LOC_Os02g42200
Os.17969.1.S1_at--1127--7731Chr02:25374155..25374179 (25 bp)
GGTGTTTGATGAACGTGCCCCTTCG
LOC_Os02g42200
Os.17969.1.S1_at--928--3931Chr02:25374132..25374156 (25 bp)
CGGCACCTACCCTTTTGCAGAGTAT
LOC_Os02g42200
Os.17969.1.S1_at--777--2491Chr02:25374067..25374091 (25 bp)
AAGCGTTACTTTGCTAACCCAATGA
LOC_Os02g42200
Os.17969.1.S1_at--784--1291Chr02:25374023..25374047 (25 bp)
AGATGCGCTAGGCTCTCTAGTGTTA
LOC_Os02g42200
Os.17969.1.S1_at--246--6531Chr02:25373995..25374019 (25 bp)
GATTTGTGCATATCGTCACTCTCAA
LOC_Os02g42200
Target Sequence 
AAGCTCTCCTCAGATACGCTATCAAAGTCCTGTAGGTCAGAAAAGGTCGTTTACTCCAGCACAAGACAACAGGGGCAGTG
ATTGTTGTCATGCTTGCGAAAGGCATATATATCACCCAATATTGCCATGGATAAATGGTGATGGAAGCATGAATAACACT
GTCTACGAAGGTCTAAGTCGTCGTATTATTGGATATACCATGCAATATCCAGGAGTAGTGGAGGAGGATATCATCCATCG
GATGGATGTGTTGAACCCGCAGACCTGCCGGACCTTGTTGGAAAAGCTGATGTTTGATAAACACCTTTATGCTCGGGTGT
TTGATGAACGTGCCCCTTCGGCACCTACCCTTTTGCAGAGTATTTTGAAGCAAGATCGCTGTAAAGAACCATCCAAGTGT
AACAAGCGTTACTTTGCTAACCCAATGAGTACATTTNTGCTATAGACAGATGCGCTAGGCTCTCTAGTGTTAGTTGATTT
GTGCATATCGTCACTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis