Browse Element(s) Details


Os.18487.1.S1_at

Description gb:CB656598
DB_XREF= gi:29660323
DB_XREF=OSJNEc11C07.r
CLONE=OSJNEc11C07
TID=Os.18487.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.18487 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_189083.1 (A.thaliana) protein kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g422001/11transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42160OsAffx.21096.2.S1_x_at1/112+25350877..25354142Protein kinase domain containing protein
LOC_Os02g42170NANA2+25358765..25359798lipase class 3 family protein, putative, expressed
LOC_Os02g42180NANA2+25361071..25365896retrotransposon protein, putative, unclassified, expressed
LOC_Os02g42190OsAffx.21096.2.S1_x_at1/112+25368823..25372024Protein kinase domain containing protein
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18487.1.S1_at--143--3972Chr12:13908194..13908215 (22 bp)
CGGATCTGGCCTACAGGGCGCGAAT
NONE
Os.18487.1.S1_at--328--9871Chr09:9086928..9086952 (25 bp)
TACAGGGCGCGAATTTGGCCACCGC
NONE
Os.18487.1.S1_at--1021--4392Chr06:25369789..25369813 (25 bp)
GCCACCATTTCCAACTCTTGTAGGT
NONE
Os.18487.1.S1_at--646--10271Chr09:9086622..9086646 (25 bp)
TTTCCAACTCTTGTAGGTTGAGCAA
NONE
Os.18487.1.S1_at--95--7911Chr09:9086607..9086631 (25 bp)
GGTTGAGCAAATTTTCGTTGCCAAA
NONE
Os.18487.1.S1_at--281--197Chr08:24625685..24625709 (25 bp)
ATTTCAGATTGGGTTATACTCATGG
NONE
Os.18487.1.S1_at--959--10174Chr08:24625699..24625753 (25 bp)
TATACTCATGGTTGCTTGTGTGGAT
NONE
Os.18487.1.S1_at--892--6811Chr09:9086539..9086563 (25 bp)
GTTTATTACTAAATGTTGTCTGGAT
NONE
Os.18487.1.S1_at--776--2291Chr09:9086529..9086553 (25 bp)
AAATGTTGTCTGGATTTGTGATATA
NONE
Os.18487.1.S1_at--468--10217Chr12:13908644..13908668 (25 bp)
TATTACTTGTGTGGATGTGCTTCAT
NONE
Os.18487.1.S1_at--946--7995Chr12:13908656..13908680 (25 bp)
GGATGTGCTTCATGTGTCAACATAT
NONE
Target Sequence 
CGGATCTGGCCTACAGGGCGCGAATTTGGCCACCGCGGCCTCTGCCCCAACCGCCGGCCACTTCCTCCTCCGCGTCCTGA
CCGCCGGCCGCAGCCACCTCCCCCGCCTAACGACCGATGGCCTCGACACGTTTGGGGGACACAGATCCGGCGCCTCTCCC
CCGACCGCCAGTCGCCTCCTCCTCCGCCACCCCACCTCCACCTGNTAGATCCGACGGCAGCCTCCTCCACCGCACCACCA
ACCGTTGGATCCGGCGGCCTCTACCACCGACCGCCGGTGTCGTCCACCGTCTCCTTCACCCGCTAGCTNCCGCCACCATT
TCCAACTCTTGTAGGTTGAGCAAATTTTCGTTGCCAAATTTCAGATTGGGTTATACTCATGGTTGCTTGTGTGGATTTGT
AGTTTATTACTAAATGTTGTCTGGATTTGTGATATATATTACTTGTGTGGATGTGCTTCATGTGTCAACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis