Browse Element(s) Details


Os.6489.1.S1_at

Description gb:AK058249.1
DB_XREF= gi:32968267
TID=Os.6489.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-B08, full insert sequence.
FL= gb:AK058249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4222011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42190OsAffx.21096.2.S1_x_at1/112+25368823..25372024Protein kinase domain containing protein
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6489.1.S1_at--416--7871Chr02:25398071..25398095 (25 bp)
GGTTAGTCGTGCCATCGTGATCAAT
LOC_Os02g42220
Os.6489.1.S1_at--649--2511Chr02:25398110..25398134 (25 bp)
AACATTTGCAAGGAGTGCGCGCCAT
LOC_Os02g42220
Os.6489.1.S1_at--366--3531Chr02:25398132..25398156 (25 bp)
CATCCTGTAATTATCTCCTCCAAAT
LOC_Os02g42220
Os.6489.1.S1_at--787--6851Chr02:25398157..25398181 (25 bp)
GTATTTCCAGATCACTTGTTTTGTA
LOC_Os02g42220
Os.6489.1.S1_at--777--2131Chr02:25398252..25398276 (25 bp)
ACAGCTGCAACCAACAACCGTTTTA
LOC_Os02g42220
Os.6489.1.S1_at--960--2611Chr02:25398267..25398291 (25 bp)
AACCGTTTTATCATTTGCTCGACAC
LOC_Os02g42220
Os.6489.1.S1_at--197--211Chr02:25398279..25398303 (25 bp)
ATTTGCTCGACACGGATTCCTGTAG
LOC_Os02g42220
Os.6489.1.S1_at--763--6151Chr02:25398350..25398374 (25 bp)
GAGGTCTAGCAGGTCAGGTTTCAAA
LOC_Os02g42220
Os.6489.1.S1_at--755--8911Chr02:25398377..25398401 (25 bp)
TGAGCTGACTTGGAAACTGCCTTTT
LOC_Os02g42220
Os.6489.1.S1_at--587--2551Chr02:25398391..25398415 (25 bp)
AACTGCCTTTTGAGCTTATGAGTGC
LOC_Os02g42220
Os.6489.1.S1_at--750--4971Chr02:25398414..25398438 (25 bp)
GCATCTGACAGGTTTGCCAATCAAA
LOC_Os02g42220
Target Sequence 
GGTTAGTCGTGCCATCGTGATCAATTGATCTTTGAAGAGAACATTTGCAAGGAGTGCGCGCCATCCTGTAATTATCTCCT
CCAAATGTATTTCCAGATCACTTGTTTTGTAGAAAAGCCAAATCTGGGTTTCCCGTAGGAAAGAAGCATCCCACAATCCA
AATGTAAAAACGAGGAAAAATACAGCTGCAACCAACAACCGTTTTATCATTTGCTCGACACGGATTCCTGTAGAGATTAT
CCTTTTTAACGAAAATGGCATGTTGAACTGAGAATCCGTGAGGTCTAGCAGGTCAGGTTTCAAAACTGAGCTGACTTGGA
AACTGCCTTTTGAGCTTATGAGTGCATCTGACAGGTTTGCCAATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis