Browse Element(s) Details


OsAffx.24685.1.S1_at

Description tigr:9630.m04046
TID=OsAffx.24685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4228011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24685.1.S1_at--12--5431Chr02:25418398..25418422 (25 bp)
GAACCAGCTGCATGGAATGGCTCGA
LOC_Os02g42280
OsAffx.24685.1.S1_at--1044--4751Chr02:25418392..25418416 (25 bp)
GCTGCATGGAATGGCTCGACCAGCA
LOC_Os02g42280
OsAffx.24685.1.S1_at--721--9371Chr02:25418377..25418401 (25 bp)
TCGACCAGCAGCGTCCAGGTTCGGT
LOC_Os02g42280
OsAffx.24685.1.S1_at--109--9211Chr02:25418364..25418388 (25 bp)
TCCAGGTTCGGTGGCGTACGTCTCG
LOC_Os02g42280
OsAffx.24685.1.S1_at--464--7171Chr02:25418345..25418369 (25 bp)
GTCTCGTTCGGGACATGGGTCGCGC
LOC_Os02g42280
OsAffx.24685.1.S1_at--468--9311Chr02:25418218..25418242 (25 bp)
TCCCCGCCGGATACACGGATCAGTA
LOC_Os02g42280
OsAffx.24685.1.S1_at--545--6471Chr02:25418209..25418233 (25 bp)
GATACACGGATCAGTACTCCGGCCG
LOC_Os02g42280
OsAffx.24685.1.S1_at--958--371Chr02:25418033..25418057 (25 bp)
ATCAACTGCGCGTACATCGTCAGGG
LOC_Os02g42280
OsAffx.24685.1.S1_at--44--1991Chr02:25418029..25418053 (25 bp)
ACTGCGCGTACATCGTCAGGGCGTG
LOC_Os02g42280
OsAffx.24685.1.S1_at--507--411Chr02:25417994..25418018 (25 bp)
ATCAGGCTGCGCAGTGCCGACCGTG
LOC_Os02g42280
OsAffx.24685.1.S1_at--971--8271Chr02:25417869..25417893 (25 bp)
GGCATTGTGCGTAGCAAAGAGGAAC
LOC_Os02g42280
Target Sequence 
GAACCAGCTGCATGGAATGGCTCGACCAGCAGCGTCCAGGTTCGGTGGCGTACGTCTCGTTCGGGACATGGGTCGCGCCG
ATCGCGCCGGGCGAGATCACCGAGCTCGCCGTCGGCCTGGAGGCCACCGGCCGGCCGTTCCTGTGGGTCCTCAAGGACGA
CCCGTCGTGGCGAGCCGGCCTCCCCGCCGGATACACGGATCAGTACTCCGGCCGCGGCAAGATCGTCGCGTGGGCGCCGC
AGGAGGACGTCCTCGCGCACGGCGCCGTCGGGTGCTACCTCACGCACTGCGGCTGGAACTCGACGCTGGAGGCGATACGG
CACGGGGTTCGCATGCTGTGCTACCCGGTGGCCGGCGACCAGTTCATCAACTGCGCGTACATCGTCAGGGCGTGGGGGAT
AGGGATCAGGCTGCGCAGTGCCGACCGTGGCGAGGTGGTGGATTGCGTCGGGAGGATCATGGAAGGCGAGGACGGGAGGC
GCTTGCGGGAGAAGCTGGATGAGCTGAGGGAGAGGGTTATGGCGGGTGAGGCATTGTGCGTAGCAAAGAGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis