Browse Element(s) Details


Os.4948.2.S1_at

Description gb:AK062167.1
DB_XREF= gi:32972185
TID=Os.4948.2
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B10, full insert sequence.
FL= gb:AK062167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g422901/11ATP-dependent Clp protease proteolytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4948.2.S1_at--901--10211Chr02:25426641..25426665 (25 bp)
TATTCCTTCCATACTGATAACTTCG
LOC_Os02g42290
Os.4948.2.S1_at--137--251NONE
ATACTGATAACTTCGTACGGTGAAA
NONE
Os.4948.2.S1_at--185--7571NONE
GGGCGCTCGGGCATGCAAACTAGAC
NONE
Os.4948.2.S1_at--327--4991NONE
GCATGCAAACTAGACTCGAGAGGTA
NONE
Os.4948.2.S1_at--1085--4671NONE
GCGGATCGCGTGTTTGGCATTGCTA
NONE
Os.4948.2.S1_at--181--6391NONE
GATCGCGTGTTTGGCATTGCTAATG
NONE
Os.4948.2.S1_at--869--8271NONE
GGCATTGCTAATGAGGTGTTAAATC
NONE
Os.4948.2.S1_at--731--2311NONE
AAAGTGTGTGGAACTGGGTACCATA
NONE
Os.4948.2.S1_at--721--7691NONE
GGGTACCATATAGGTTGAAATCCTT
NONE
Os.4948.2.S1_at--965--10071NONE
TAGGTTGAAATCCTTGCATGGGAAA
NONE
Os.4948.2.S1_at--628--7711NONE
GGGTGGAACAGATTAAACGATTAGA
NONE
Target Sequence 
TATTCCTTCCATACTGATAACTTCGTACGGTGAAAAAAAAAAAATAAAAAATAAAAAAAAACATGTGGGCGCTCGGGCAT
GCAAACTAGACTCGAGAGGTATGATTGGGCGGATCGCGTGTTTGGCATTGCTAATGAGGTGTTAAATCATGGGGTGTAAA
AGTGTGTGGAACTGGGTACCATATAGGTTGAAATCCTTGCATGGGAAAAAAGAGAGAAGAGGAACATGCGTAGGGGTGGA
ACAGATTAAACGATTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4948.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis