Browse Element(s) Details


Os.54078.1.S1_at

Description gb:AK101737.1
DB_XREF= gi:32986946
TID=Os.54078.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061I23, full insert sequence.
FL= gb:AK101737.1 gb:AK106596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4230011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed
LOC_Os02g42330Os.17898.1.S1_at11/112+25453616..25456858Nitrilase 4, putative, expressed
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54078.1.S1_at--337--7891Chr02:25431738..25431762 (25 bp)
GGTTCATTCTGGTTCAAGTCTGGAC
LOC_Os02g42300
Os.54078.1.S1_at--378--9731Chr02:25431751..25431775 (25 bp)
TCAAGTCTGGACGTTCTGGTAATCA
LOC_Os02g42300
Os.54078.1.S1_at--693--8991Chr02:25431836..25431860 (25 bp)
TGAAGAGCTCTTCCTGAACTACCGG
LOC_Os02g42300
Os.54078.1.S1_at--793--5451Chr02:25431851..25431875 (25 bp)
GAACTACCGGTACAGCAACTCGAAG
LOC_Os02g42300
Os.54078.1.S1_at--805--831Chr02:25431926..25431950 (25 bp)
ATGGAGCTAGTTTTGCACATCTTAG
LOC_Os02g42300
Os.54078.1.S1_at--315--5871Chr02:25431955..25431979 (25 bp)
GAGCCTGTAACAATTCTTCCTGCAT
LOC_Os02g42300
Os.54078.1.S1_at--898--3171Chr02:25431990..25432014 (25 bp)
CAATTATTTTTGTCCCGGTGTCGAT
LOC_Os02g42300
Os.54078.1.S1_at--187--4831Chr02:25432072..25432096 (25 bp)
GCTCATCTGGAGTCCTTGATCTTAA
LOC_Os02g42300
Os.54078.1.S1_at--947--8791Chr02:25432118..25432142 (25 bp)
TGTTCTATACTCTTCTCACAAGGCT
LOC_Os02g42300
Os.54078.1.S1_at--1046--10471Chr02:25432181..25432205 (25 bp)
TTACATGGTCATTAGTCCTGGGAAC
LOC_Os02g42300
Os.54078.1.S1_at--704--5471Chr02:25432202..25432226 (25 bp)
GAACTATGTGTTCTTAATCCCAATA
LOC_Os02g42300
Target Sequence 
GGTTCATTCTGGTTCAAGTCTGGACGTTCTGGTAATCAGGAAGGGGAGTCTCCAGTTCTGAAGACTCTAGTGCTGGTGAG
TACAAGGTCCATATGTGATGAAGAGCTCTTCCTGAACTACCGGTACAGCAACTCGAAGAAGCGACCAGAGTGGTATATCC
CAGTTGATGAAGAAGAGGATAAGAGACGATGGAGCTAGTTTTGCACATCTTAGCTGTGAGCCTGTAACAATTCTTCCTGC
ATTGCTTTCTAACAATTATTTTTGTCCCGGTGTCGATCGGCAAATTGCAACTGGGAGTGATTTAGCTTCTGAAGTGAGAT
GGCAATTTTATTATGCTCATCTGGAGTCCTTGATCTTAATTACCATTTTGGTAGAGTGCCTGTTCTATACTCTTCTCACA
AGGCTTTTGTAATGCATAAAAAATATGAGTACCAAACTACCAGTTACATGGTCATTAGTCCTGGGAACTATGTGTTCTTA
ATCCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis