Browse Element(s) Details


Os.17898.1.S1_at

Description gb:AK069855.1
DB_XREF= gi:32979879
TID=Os.17898.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036G11, full insert sequence.
FL= gb:AK069855.1 gb:AK058965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4233011/11Nitrilase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed
LOC_Os02g42330Os.17898.1.S1_at11/112+25453616..25456858Nitrilase 4, putative, expressed
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein
LOC_Os02g42350Os.4158.1.S1_at11/112+25459865..25463715Nitrilase 4, putative, expressed
LOC_Os02g42360OsAffx.12454.1.S1_at11/112+25475019..25476086expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009970biological_processcellular response to sulfate starvation
GO:0019499biological_processcyanide metabolism
GO:0019762biological_processglucosinolate catabolism
GO:0051410biological_processdetoxification of nitrogen compound
GO:0000257molecular_functionnitrilase activity
GO:0018822molecular_functionnitrile hydratase activity
GO:0047427molecular_functioncyanoalanine nitrilase activity
GO:0047558molecular_function3-cyanoalanine hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17898.1.S1_at--996--8531Chr02:25456095..25456119 (25 bp)
TGGAGGAAGTTCCATCGTCTCACCA
LOC_Os02g42330
Os.17898.1.S1_at--336--10231Chr02:25456429..25456453 (25 bp)
TTTGATTTCGACGTCGTGGGACACT
LOC_Os02g42330
Os.17898.1.S1_at--985--7611Chr02:25456446..25456470 (25 bp)
GGGACACTATGCACGACCCGAGGTG
LOC_Os02g42330
Os.17898.1.S1_at--437--7311Chr02:25456468..25456492 (25 bp)
GTGCTGAGCCTGACCGTGAAAACCG
LOC_Os02g42330
Os.17898.1.S1_at--20--3691Chr02:25456562..25456586 (25 bp)
CTAGGACCTGATGGCCATTAATCTT
LOC_Os02g42330
Os.17898.1.S1_at--582--131Chr02:25456578..25456602 (25 bp)
ATTAATCTTCCATCGCGGTGTGCAA
LOC_Os02g42330
Os.17898.1.S1_at--894--5991Chr02:25456671..25456695 (25 bp)
GAGACGATGCTTCCCTGATAAACAA
LOC_Os02g42330
Os.17898.1.S1_at--1120--3171Chr02:25456693..25456717 (25 bp)
CAATTGGTGCCTATAGTGCTGTAAT
LOC_Os02g42330
Os.17898.1.S1_at--121--2451Chr02:25456727..25456751 (25 bp)
AAAATCGTGTCATGTTTCTTCCTCT
LOC_Os02g42330
Os.17898.1.S1_at--690--6831Chr02:25456740..25456764 (25 bp)
GTTTCTTCCTCTTATTCGTTAGTGA
LOC_Os02g42330
Os.17898.1.S1_at--226--9391Chr02:25456755..25456779 (25 bp)
TCGTTAGTGAAGACGTCCCAACTCC
LOC_Os02g42330
Target Sequence 
TGGAGGAAGTTCCATCGTCTCACCATCTGGAACAGNTTCTGGCAGNGTCCAAACNTATGAAGGCGAGGGCCTCCNTCACA
GNCTGACTTGGACCTTGGAGAAATTGCTCGAGCTAAGTTTGATTTCGACGTCGTGGGACACTATGCACGACCCGAGGTGC
TGAGCCTGACCGTGAAAACCGAATCAAAGCTGCCCGTTTCTTTTACTTCTGCTGCAGAGAAAAATTCTGCTGCAAAGAGT
GACGGTATNTCTAGGACCTGATGGCCATTAATCTTCCATCGCGGTGTGCAATAAAATTGTCAGCTGGCCAGTGTTGGTAT
NACATGAATAATCTGTCTTTAGTTTCTTGTAAAGATTTGGAGACGATGCTTCCCTGATAAACAATTGGTGCCTATAGTGC
TGTAATACTCGTCTGAAAATCGTGTCATGTTTCTTCCTCTTATTCGTTAGTGAAGACGTCCCAACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis