Browse Element(s) Details


Os.27414.1.S1_at

Description gb:AK059561.1
DB_XREF= gi:32969579
TID=Os.27414.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) arm repeat containing protein homolog-like (OJ1060_D03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H02, full insert sequence.
FL= gb:AK059561.1 gb:AK058404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3959011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed
LOC_Os07g39570OsAffx.5579.1.S1_at11/117+23713141..23713665hypothetical protein
LOC_Os07g39580Os.38395.5.S1_at10/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.3.S1_x_at7/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.2.S1_x_at5/117+23715289..23718608hypothetical protein
LOC_Os07g39580OsAffx.9103.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39590Os.27414.1.S1_at11/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.1.S1_a_at10/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.2.S1_x_at7/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39600NANA7+23731554..23733011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.47463.1.S1_x_at2/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.14491.2.S1_x_at1/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39620Os.10483.1.S1_at11/117+23744761..23746984C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27414.1.S1_at--547--10631Chr07:23722635..23722659 (25 bp)
TTCGAGCTTGGCCAGGTAATGCTGT
LOC_Os07g39590
Os.27414.1.S1_at--713--7071Chr07:23722658..23722682 (25 bp)
GTAATCATGTGGTCGCAGTATGCTT
LOC_Os07g39590
Os.27414.1.S1_at--839--1191Chr07:23722674..23722698 (25 bp)
AGTATGCTTCGCTCTTATTTAACCT
LOC_Os07g39590
Os.27414.1.S1_at--1102--10191Chr07:23722689..23722713 (25 bp)
TATTTAACCTCGTGTGCTCTGTTCT
LOC_Os07g39590
Os.27414.1.S1_at--951--3291Chr07:23722799..23722823 (25 bp)
CAAATGTGGTTTGCGAGTGACGGAT
LOC_Os07g39590
Os.27414.1.S1_at--574--1971Chr07:23722848..23722872 (25 bp)
ACTGAGAGGAGGATCCAGCCATCCA
LOC_Os07g39590
Os.27414.1.S1_at--346--10231Chr07:23722897..23722921 (25 bp)
TTGTTGGTAACTGCTAAGGTGACGT
LOC_Os07g39590
Os.27414.1.S1_at--885--9871Chr07:23722937..23722961 (25 bp)
TACAGGATGCTAGGGTGGTATGCTT
LOC_Os07g39590
Os.27414.1.S1_at--914--8571Chr07:23722952..23722976 (25 bp)
TGGTATGCTTGCTTGGCTTGGAAAG
LOC_Os07g39590
Os.27414.1.S1_at--94--432Chr11:2803422..2803455 (24 bp)
ATCATCAACCATGTCTTTTTTCCTT
NONE
Os.27414.1.S1_at--386--8531Chr07:23723026..23723050 (25 bp)
TGGAGTCCGAATTCCCCTGTTCCAA
LOC_Os07g39590
Target Sequence 
TTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTT
GGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTG
AATACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGG
GGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGG
TATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTNTGGTTTGGAGTCCG
AATTCCCCTGTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis