Browse Element(s) Details


Os.27414.2.S1_x_at

Description gb:NM_186995.1
DB_XREF= gi:34901075
GEN=OJ1060_D03.6
TID=Os.27414.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) arm repeat containing protein homolog-like (OJ1060_D03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) arm repeat containing protein homolog-like (OJ1060_D03.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g395907/11Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os05g462701/11XPG I-region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed
LOC_Os07g39570OsAffx.5579.1.S1_at11/117+23713141..23713665hypothetical protein
LOC_Os07g39580Os.38395.5.S1_at10/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.3.S1_x_at7/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.2.S1_x_at5/117+23715289..23718608hypothetical protein
LOC_Os07g39580OsAffx.9103.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39590Os.27414.1.S1_at11/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.1.S1_a_at10/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.2.S1_x_at7/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39600NANA7+23731554..23733011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.47463.1.S1_x_at2/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.14491.2.S1_x_at1/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39620Os.10483.1.S1_at11/117+23744761..23746984C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27414.2.S1_x_at--1092--3932Chr07:23721145..23721169 (25 bp)
CGGCAAGAAGGACGCGCTCACCACG
LOC_Os07g39590
Os.27414.2.S1_x_at--294--1471Chr07:23721276..23721300 (25 bp)
AGAAGGCAATGGTGGTCCTCGCCAG
LOC_Os07g39590
Os.27414.2.S1_x_at--2--7951Chr07:23721348..23721372 (25 bp)
GGATACCGGCGCTTGTCGAGACCAT
LOC_Os07g39590
Os.27414.2.S1_x_at--91--10831Chr07:23721360..23721384 (25 bp)
TTGTCGAGACCATCGAGGACGGCCC
LOC_Os07g39590
Os.27414.2.S1_x_at--397--9171Chr07:23721511..23721667 (25 bp)
TGCCCGTGCCAAGCACAAGGCTGAA
LOC_Os07g39590
Os.27414.2.S1_x_at--1063--5531Chr07:23722564..23722588 (25 bp)
GAAACTTTGCTTGGGTATCTCCGCG
LOC_Os07g39590
Os.27414.2.S1_x_at--18--1051Chr07:23722615..23722639 (25 bp)
AGGGTTGAACCCGTGGCAGCTTCGA
LOC_Os07g39590
Os.27414.2.S1_x_at--783--9371NONE
TCGAGCTTGGCCTTTATAGTATTAA
NONE
Os.27414.2.S1_x_at--303--6271Chr07:23723393..23723417 (25 bp)
GATGTGTCACATTCAGTCTTACTCC
NONE
Os.27414.2.S1_x_at--1106--1111Chr07:23723407..23723431 (25 bp)
AGTCTTACTCCTACCTCTGGAAGTG
NONE
Os.27414.2.S1_x_at--163--9911Chr07:23723412..23723436 (25 bp)
TACTCCTACCTCTGGAAGTGCTGCT
NONE
Target Sequence 
CGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCG
CCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTC
GCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCC
GGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCC
GTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTT
GGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCTTTATAGT
ATTAAGATGTGTCACATTCAGTCTTACTCCTACCTCTGGAAGTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27414.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis