Browse Element(s) Details


Os.27416.1.S1_at

Description gb:AK064935.1
DB_XREF= gi:32974953
TID=Os.27416.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000O24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O24, full insert sequence.
FL= gb:AK061992.1 gb:AK064935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g316806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31630OsAffx.26950.1.S1_at6/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.24493.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.16522.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31640OsAffx.27108.2.S1_s_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31640OsAffx.27108.2.S1_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31650OsAffx.14904.1.S1_at11/115+18344865..18345278hypothetical protein
LOC_Os05g31660OsAffx.27109.1.S1_at10/115+18346870..18347692expressed protein
LOC_Os05g31670Os.11260.1.S1_at11/115+18348218..18349149plasma membrane associated protein, putative, expressed
LOC_Os05g31680Os.27416.1.S1_at6/115+18352170..18356265expressed protein
LOC_Os05g31690Os.55351.1.S1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.25394.1.A1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.55351.1.S1_x_at8/115+18367037..18370882expressed protein
LOC_Os05g31700NANA5+18375781..18375993transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27416.1.S1_at--588--6751Chr05:18355895..18356064 (25 bp)
GTTCAGCTTTCAGGCGATGGACTTC
LOC_Os05g31680
Os.27416.1.S1_at--231--9811Chr05:18356094..18356118 (25 bp)
TAACACGGGCTACGAGAAGTACTTC
LOC_Os05g31680
Os.27416.1.S1_at--621--1451Chr05:18356135..18356159 (25 bp)
AGAAGAACTACTACGCTGCCCTAGA
LOC_Os05g31680
Os.27416.1.S1_at--1030--4771Chr05:18356149..18356173 (25 bp)
GCTGCCCTAGACGAACCTGAGATGG
LOC_Os05g31680
Os.27416.1.S1_at--143--3551Chr05:18356175..18356199 (25 bp)
CATCGATCAGATCATCCCGTACATG
LOC_Os05g31680
Os.27416.1.S1_at--490--6831Chr05:18356209..18356233 (25 bp)
GTTTCCCCAATATTCTTGGTTGCTT
LOC_Os05g31680
Os.27416.1.S1_at--1107--3651Chr05:18356291..18356315 (25 bp)
CTTCAATCTTTGCTCCACTGACGAA
NONE
Os.27416.1.S1_at--1153--3091Chr05:18356420..18356444 (25 bp)
AATAGTATTGTCTTTTGGGCCGGCG
NONE
Os.27416.1.S1_at--223--10851Chr05:18356434..18356458 (25 bp)
TTGGGCCGGCGTAAGCCAGCTGTTA
NONE
Os.27416.1.S1_at--1039--8891Chr05:18356471..18356495 (25 bp)
TGAGAGCCTGTCTTCAGCTGGGCTA
NONE
Os.27416.1.S1_at--890--7571Chr05:18356490..18356514 (25 bp)
GGGCTAGGCCCATGTCAAAGATAAA
NONE
Target Sequence 
GTTCAGCTTTCAGGCGATGGACTTCATGAAGGTGAACAGCTCCCCTTTGCCCCGTAACACGGGCTACGAGAAGTACTTCG
ACAAGTTTGGGGGCCAGAAGAACTACTACGCTGCCCTAGACGAACCTGAGATGGGCATCGATCAGATCATCCCGTACATG
CTCTTCCTTGTTTCCCCAATATTCTTGGTTGCTTTTGTTGCTTTGAGAAAATCCTTCCAGTTATAAAAGTCAGGAAGCAT
ATGCTTGAATGCTTCAATCTTTGCTCCACTGACGAATTGATTAGTATGTTCCTCGAAACAAAAGGCTGAAGAATTGATAT
TTGACTAGTATGCAGATATATTGACTTGATTAGTATGTAGATAAAAATCAAAACTTATTTAATAGTATTGTCTTTTGGGC
CGGCGTAAGCCAGCTGTTAGGCAGGCTAGTCTGAGAGCCTGTCTTCAGCTGGGCTAGGCCCATGTCAAAGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis