Browse Element(s) Details


Os.27422.1.S1_at

Description gb:AK063552.1
DB_XREF= gi:32973570
TID=Os.27422.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E04, full insert sequence.
FL= gb:AK063552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g270007/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g241001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26984Os.14896.1.S1_at11/112+15837028..15850339expressed protein
LOC_Os02g26984OsAffx.19099.1.S1_at1/112+15837028..15850339expressed protein
LOC_Os02g27000Os.27422.2.S1_at11/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27000Os.27422.1.S1_at7/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27010NANA2+15873981..15875254retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27020OsAffx.27207.1.S1_at10/112+15877457..15878416hypothetical protein
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27422.1.S1_at--276--6791Chr02:15863643..15863667 (25 bp)
GTTAGATTACGCGACACATTGTTGA
LOC_Os02g27000
Os.27422.1.S1_at--140--7011Chr02:15863691..15863715 (25 bp)
GTACTGATCGTTGTTGCTGATGTCT
LOC_Os02g27000
Os.27422.1.S1_at--258--8751Chr02:15863757..15863781 (25 bp)
TGTACTTTGTTACCGTTGTCCTCAT
LOC_Os02g27000
Os.27422.1.S1_at--974--10811Chr02:15863772..15863796 (25 bp)
TTGTCCTCATCTTCTTTTCTGTGTG
LOC_Os02g27000
Os.27422.1.S1_at--743--3671NONE
CTTTTCTGTGTGTCTAGTGGCTTTA
NONE
Os.27422.1.S1_at--1045--2991NONE
AATGAAGTCATTTAGCCAGCAACAG
NONE
Os.27422.1.S1_at--323--1411Chr02:15864096..15864120 (25 bp)
AGACATTCACTGCAGGTAGGTTCCA
LOC_Os02g27000
Os.27422.1.S1_at--414--3831NONE
CTGCAGGTAGGTTCCAGTTTTACTT
NONE
Os.27422.1.S1_at--266--1212Chr07:13667762..13667791 (24 bp)
AGTTTTACTTTGTCTGTTTGTGCCA
LOC_Os07g24100
Os.27422.1.S1_at--820--8771Chr02:15864134..15864158 (25 bp)
TGTTTGTGCCAAAGCAATGCTCTGA
LOC_Os02g27000
Os.27422.1.S1_at--406--8011Chr02:15864185..15864209 (25 bp)
GGAGGCCTCTGCAGTTAATGTATCA
LOC_Os02g27000
Target Sequence 
GTTAGATTACGCGACACATTGTTGAACCTGGCATATCATAAAAATAAAGTACTGATCGTTGTTGCTGATGTCTCTTCTTT
TCTTGGCTTAGTTCCTTAAATGATTTTTTTTCTCTGTACTTTGTTACCGTTGTCCTCATCTTCTTTTCTGTGTGTCTAGT
GGCTTTATAATAGTACAGTTTAGCTCAATCAAGGAACAAGGGACTCGGATTATTATATACAATCTATGGGAGAATGAACA
GGGAGAGTTGGAGCTTGATTTTGATACTGATGTAAATGTGAGTGCCAACTAATAATTAATGAAGTCATTTAGCCAGCAAC
AGAAAATGTGGTTAAATATGAAATTTAGTGATGTTTGAGATGGCAGGATATTCAAATTAGAGGTGGTAACCGAGATCAGA
AAAATATCCAGCTGGCAAAGCAGTTTCCAAACTCCAGACATTTTTTTACTTATAGACATTCACTGCAGGTAGGTTCCAGT
TTTACTTTGTCTGTTTGTGCCAAAGCAATGCTCTGAATGCTTTTTTTTTTCTTTTTTCCTGAGGAGGCCTCTGCAGTTAA
TGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis