Browse Element(s) Details


Os.27433.1.S1_at

Description gb:AK105559.1
DB_XREF= gi:32990768
TID=Os.27433.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B07, full insert sequence.
FL= gb:AK105559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g301209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30100Os.7160.1.S1_at11/117+17742340..17753618Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g30110Os.52110.1.S1_at11/117+17765848..17769687expressed protein
LOC_Os07g30120Os.27433.1.S1_at9/117+17770977..17774813hypothetical protein
LOC_Os07g30130Os.26708.1.S1_at11/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30130Os.53383.1.S1_x_at6/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27433.1.S1_at--320--1271Chr07:17772760..17772784 (25 bp)
AGATAGGCTGGTGGACCTTAGCTGT
LOC_Os07g30120
Os.27433.1.S1_at--327--3671Chr07:17772776..17772800 (25 bp)
CTTAGCTGTGGACGACTGGGATCTT
LOC_Os07g30120
Os.27433.1.S1_at--213--1791Chr07:17772807..17772831 (25 bp)
ACCGATCCAAGCCTCCGAGGAGAGG
LOC_Os07g30120
Os.27433.1.S1_at--1087--8551Chr07:17774114..17774138 (25 bp)
TGGATGGATTACGATCTCGCGTTCT
LOC_Os07g30120
Os.27433.1.S1_at--641--6411Chr07:17774126..17774150 (25 bp)
GATCTCGCGTTCTCCAATGTGGCAA
LOC_Os07g30120
Os.27433.1.S1_at--1053--8231Chr07:17774146..17774170 (25 bp)
GGCAAAGTTCGCTCACTTTTGCAAT
LOC_Os07g30120
Os.27433.1.S1_at--112--7531Chr07:17774171..17774195 (25 bp)
GTGGAAGTTGCTTACCCTTGACTAA
LOC_Os07g30120
Os.27433.1.S1_at--1029--7732Chr07:17774748..17774772 (25 bp)
GGTGGTGCTGAGTGTATGCCATAAT
LOC_Os07g30120
Os.27433.1.S1_at--813--7992Chr07:17774786..17774810 (25 bp)
GGATGTAATTTGCTTGCCTTCAGGA
LOC_Os07g30120
Os.27433.1.S1_at--1030--7992Chr07:17774817..17774841 (25 bp)
GGATGTATTTTTTGCTGACCAACTG
NONE
Os.27433.1.S1_at--732--1811Chr07:17774838..17774862 (25 bp)
ACTGGATGTATGCTTTCTTAACCGG
NONE
Target Sequence 
AGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGAGGAGAGGGATGGCTG
TGGAAGGGCACATCACTGACAAGATCCATAGATGTTTGGCCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAA
GTTCGCTCACTTTTGCAATGTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAA
TGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGTCTAAGAT
ACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGA
TAAATTGGATGTATTTTTTGCTGACCAACTGGATGTATGCTTTCTTAACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis