Browse Element(s) Details


Os.27449.1.S1_at

Description gb:AK103602.1
DB_XREF= gi:32988811
TID=Os.27449.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133G01, full insert sequence.
FL= gb:AK103602.1 gb:AK058309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4932611/11SET domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49290Os.47463.1.S1_x_at6/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49290Os.14491.2.S1_x_at4/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49300NANA2+30122093..30125424transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49310Os.49207.1.S1_at11/112+30129487..30132803Protein kinase G11A, putative, expressed
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed
LOC_Os02g49326Os.27449.1.S1_at11/112+30138391..30142823SET domain-containing protein, putative, expressed
LOC_Os02g49332OsAffx.3008.1.S1_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.3.S1_x_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.1.S1_a_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.4.S1_at9/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49340OsAffx.3009.1.S1_at11/112+30149093..30150461nitrate-induced NOI protein, putative, expressed
LOC_Os02g49350OsAffx.12563.1.S1_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49350Os.7446.1.S1_s_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49360Os.14816.1.S1_at11/112+30153349..30155848tRNA methyltransferase family protein, expressed
LOC_Os02g49370Os.8891.1.S1_at10/112+30158404..30159572leafy cotyledon1, putative, expressed
LOC_Os02g49380NANA2+30163597..30166399hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030785molecular_function[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27449.1.S1_at--1106--7731Chr02:30142319..30142343 (25 bp)
GGTGGTGAACTTAAAGCTCTGTCAT
LOC_Os02g49326
Os.27449.1.S1_at--630--4811Chr02:30142334..30142358 (25 bp)
GCTCTGTCATTGTTCAATGGGCTCA
LOC_Os02g49326
Os.27449.1.S1_at--990--2971Chr02:30142349..30142373 (25 bp)
AATGGGCTCAGAAAGCTCTTCAAAT
LOC_Os02g49326
Os.27449.1.S1_at--544--9751Chr02:30142426..30142529 (25 bp)
TAATCTCTAGTATCTTGCTTCTTCC
LOC_Os02g49326
Os.27449.1.S1_at--837--10671Chr02:30142526..30142550 (25 bp)
TTCCTTTCAGGTTGTCTTTGTTGCT
LOC_Os02g49326
Os.27449.1.S1_at--246--5331Chr02:30142635..30142659 (25 bp)
GAAGTGGTCACAGCTCAATAGAAGA
LOC_Os02g49326
Os.27449.1.S1_at--811--5611Chr02:30142658..30142682 (25 bp)
GACACTAGTTGTAACTTGCGATTGA
LOC_Os02g49326
Os.27449.1.S1_at--493--4631Chr02:30142675..30142699 (25 bp)
GCGATTGAACAGTCCATATCTTGGT
LOC_Os02g49326
Os.27449.1.S1_at--508--10011Chr02:30142712..30142736 (25 bp)
TAGCACCATGCAACAATGTACCAGT
LOC_Os02g49326
Os.27449.1.S1_at--597--8031Chr02:30142737..30142761 (25 bp)
GGAGTCATCTCGTGTATATTTTGTT
LOC_Os02g49326
Os.27449.1.S1_at--209--6851Chr02:30142768..30142792 (25 bp)
GTTTCCCCTCGATATCTATAGCATA
LOC_Os02g49326
Target Sequence 
GGTGGTGAACTTAAAGCTCTGTCATTGTTCAATGGGCTCAGAAAGCTCTTCAAATAAAAGGATGGATTTGTTTTTCAATG
TTAGCTGAAGATTTCGAGGACAATGTTTAATCTCTAGTATCTTGCTTCTTCCTTTCAGGTTGTCTTTGTTGCTGATGAAG
CTCAGACTGTTGAAGAAAAGGAAATTGACAAATCAGATTACAATCTCAGCCGACAAGCAACTGATGCTAGAAGACTAGAA
GTGGTCACAGCTCAATAGAAGACACTAGTTGTAACTTGCGATTGAACAGTCCATATCTTGGTTTAAATCTACTATAGCAC
CATGCAACAATGTACCAGTGGAGTCATCTCGTGTATATTTTGTTTCAGGGGTTTCCCCTCGATATCTATAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis