Browse Element(s) Details


Os.14816.1.S1_at

Description gb:AK058341.1
DB_XREF= gi:32968359
TID=Os.14816.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D08, full insert sequence.
FL= gb:AK058341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4936011/11tRNA methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49310Os.49207.1.S1_at11/112+30129487..30132803Protein kinase G11A, putative, expressed
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed
LOC_Os02g49326Os.27449.1.S1_at11/112+30138391..30142823SET domain-containing protein, putative, expressed
LOC_Os02g49332OsAffx.3008.1.S1_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.3.S1_x_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.1.S1_a_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.4.S1_at9/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49340OsAffx.3009.1.S1_at11/112+30149093..30150461nitrate-induced NOI protein, putative, expressed
LOC_Os02g49350OsAffx.12563.1.S1_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49350Os.7446.1.S1_s_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49360Os.14816.1.S1_at11/112+30153349..30155848tRNA methyltransferase family protein, expressed
LOC_Os02g49370Os.8891.1.S1_at10/112+30158404..30159572leafy cotyledon1, putative, expressed
LOC_Os02g49380NANA2+30163597..30166399hypothetical protein
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49400Os.47463.1.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400Os.14491.2.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400OsAffx.9860.1.S1_x_at1/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14816.1.S1_at--281--1411Chr02:30155275..30155299 (25 bp)
AGACTTCGTTCTTTCATGTGATCCC
LOC_Os02g49360
Os.14816.1.S1_at--417--8891Chr02:30155540..30155564 (25 bp)
TGAGGATCACTCTCCCGGTGCAGCA
LOC_Os02g49360
Os.14816.1.S1_at--753--7431Chr02:30155660..30155684 (25 bp)
GTGTATGATCACTGTTCTGTAGAAC
LOC_Os02g49360
Os.14816.1.S1_at--774--8731Chr02:30155677..30155701 (25 bp)
TGTAGAACTGCTTTTCTTTAACCCG
LOC_Os02g49360
Os.14816.1.S1_at--748--10471Chr02:30155707..30155731 (25 bp)
TTAACTCGGGCGTACATTGTTTGGA
LOC_Os02g49360
Os.14816.1.S1_at--249--9891Chr02:30155719..30155743 (25 bp)
TACATTGTTTGGAGCGCTCTCTTTT
LOC_Os02g49360
Os.14816.1.S1_at--1019--4811Chr02:30155734..30155758 (25 bp)
GCTCTCTTTTCGTGTATCTCAGTCG
LOC_Os02g49360
Os.14816.1.S1_at--364--451Chr02:30155749..30155773 (25 bp)
ATCTCAGTCGTGTTTGACAGCCTAC
LOC_Os02g49360
Os.14816.1.S1_at--74--5651Chr02:30155764..30155788 (25 bp)
GACAGCCTACTCTTGTCATTGATGA
LOC_Os02g49360
Os.14816.1.S1_at--1016--2891Chr02:30155796..30155820 (25 bp)
AAGGTAGCCCTGAACCCGTTGCAAT
LOC_Os02g49360
Os.14816.1.S1_at--882--591Chr02:30155819..30155843 (25 bp)
ATGCCTGCAAGCGTTTGGCCAGTGA
LOC_Os02g49360
Target Sequence 
AGACTTCGTTCTTTCATGTGATCCCNCNAGNNGAAAAGAGGAGAAGNCTGAANCTGNAAATNGATGGGGTCGATATAAGC
ATGAACAATGTTGATGCCGCCGAAGGGNCTGAGAATCAAGGTGACCTTACCANAGGTTTTTGATGAGGATGTAGATGATG
ACGATGTTNGTTGATGAAGAACTACAAGAGGAAGACACCGATATGGCTAAGAANAAAGCAGTGTATTAGACATGAAAATG
GTGAGGCAGAGGATGCCTCCACCAGGCCAGCTGAGGATCACTCTCCCGGTGCAGCAGCAGAGACGACGACACCCACCGGA
GGCGCTCTCCCCCAGGCTGAGCAGAGTAAAGAAAGCANATGGTGCCGATGACTGAAGAAGACTGGACTGCAGGTGTATGA
TCACTGTTCTGTAGAACTGCTTTTCTTTAACCCGGGGTTTTAACTCGGGCGTACATTGTTTGGAGCGCTCTCTTTTCGTG
TATCTCAGTCGTGTTTGACAGCCTACTCTTGTCATTGATGACTATAACAAGGTAGCCCTGAACCCGTTGCAATGCCTGCA
AGCGTTTGGCCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis