Browse Element(s) Details


Os.8891.1.S1_at

Description gb:AY062184.1
DB_XREF= gi:37542679
GEN=LEC1B
TID=Os.8891.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8891 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) HAP3 transcriptional-activator (LEC1B) mRNA, complete cds.
PROD=HAP3 transcriptional-activator
FL= gb:AY062184.1 gb:AK107861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4937010/11leafy cotyledon1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed
LOC_Os02g49326Os.27449.1.S1_at11/112+30138391..30142823SET domain-containing protein, putative, expressed
LOC_Os02g49332OsAffx.3008.1.S1_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.3.S1_x_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.1.S1_a_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.4.S1_at9/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49340OsAffx.3009.1.S1_at11/112+30149093..30150461nitrate-induced NOI protein, putative, expressed
LOC_Os02g49350OsAffx.12563.1.S1_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49350Os.7446.1.S1_s_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49360Os.14816.1.S1_at11/112+30153349..30155848tRNA methyltransferase family protein, expressed
LOC_Os02g49370Os.8891.1.S1_at10/112+30158404..30159572leafy cotyledon1, putative, expressed
LOC_Os02g49380NANA2+30163597..30166399hypothetical protein
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49400Os.47463.1.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400Os.14491.2.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400OsAffx.9860.1.S1_x_at1/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8891.1.S1_at--819--811Chr02:30159059..30159083 (25 bp)
ATGGTCACGTCGGTGGGATGCTCAA
LOC_Os02g49370
Os.8891.1.S1_at--598--8612Chr07:1681119..1681148 (24 bp)
TGGTGACGCACCACGACATGCAGAT
NONE
Os.8891.1.S1_at--475--10631Chr02:30158751..30158775 (25 bp)
TTCGAGCACCAGCATCCGTTCGGAT
LOC_Os02g49370
Os.8891.1.S1_at--750--2951Chr02:30158706..30158730 (25 bp)
AATGGCGATCGGTCTGCACCTGCAT
LOC_Os02g49370
Os.8891.1.S1_at--293--5131Chr02:30158681..30158705 (25 bp)
GCACACGTATCGCATGCAGATCGAG
LOC_Os02g49370
Os.8891.1.S1_at--258--5891Chr02:30158659..30158683 (25 bp)
GAGCTAGTAGTGCAACTGGCTAACT
LOC_Os02g49370
Os.8891.1.S1_at--389--1391Chr02:30158615..30158639 (25 bp)
AGACTTAGTGATCGTGTGTGGTTTA
LOC_Os02g49370
Os.8891.1.S1_at--453--6531Chr02:30158557..30158581 (25 bp)
GATTTTAATTTCCTACTGTCAGTTT
LOC_Os02g49370
Os.8891.1.S1_at--85--8731NONE
TGTCAGTTTAATTCACCCGTTCATG
NONE
Os.8891.1.S1_at--427--4031Chr02:30158525..30158549 (25 bp)
CGTTCATGTACTCGATCCAGCTAGT
LOC_Os02g49370
Os.8891.1.S1_at--471--6351Chr02:30158512..30158536 (25 bp)
GATCCAGCTAGTACTACTCCTAGTT
LOC_Os02g49370
Target Sequence 
ATGGTCACGTCGGTGGGATGCTCAAGTCCCGCGCGCAGGGCTCCATGGTGACGCACCACGACATGCAGATGCACGCNGCC
ATGTACGGTGGCGGCGCGGTGCCGCCGCCGCCGCATCCTCCTCCGCACCACCACGCGTTCCACCAGCTCATGCCGCCGCA
CCACGGCCAGTACGCGCCGCCGTACGACATGTACGGCGGCGAGCACGGGATGGCGGCGTACTACGGCGGGATGTACGCGC
CCGGCAGCGGCGGCGACGGGAGCGGCAGCAGCGGCAGCGGTGGCGCCGGCACGCCGCAGACCGTCAACTTCGAGCACCAG
CATCCGTTCGGATACAAGTAGTAACANGCAGCAGAATGGCGATCGGTCTGCACCTGCATGCACACGTATCGCATGCAGAT
CGAGCTAGTAGTGCAACTGGCTAACTTGAACCAGTTAAAAACTTAAGACTTAGTGATCGTGTGTGGTTTAATTAATTTGC
TACGTTCAGGTAGTGATCGATGAGATTTTAATTTCCTACTGTCAGTTTAATTCACCCGTTCATGTACTCGATCCAGCTAG
TACTACTCCTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis