Browse Element(s) Details


Os.49207.1.S1_at

Description gb:AK065888.1
DB_XREF= gi:32975906
TID=Os.49207.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044J15, full insert sequence.
FL= gb:AK065888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4931011/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os02g49280OsAffx.3007.1.S1_at11/112+30111406..30112504Protease inhibitor/seed storage/LTP family protein
LOC_Os02g49290Os.47463.1.S1_x_at6/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49290Os.14491.2.S1_x_at4/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49300NANA2+30122093..30125424transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49310Os.49207.1.S1_at11/112+30129487..30132803Protein kinase G11A, putative, expressed
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed
LOC_Os02g49326Os.27449.1.S1_at11/112+30138391..30142823SET domain-containing protein, putative, expressed
LOC_Os02g49332OsAffx.3008.1.S1_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.3.S1_x_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.1.S1_a_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.4.S1_at9/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49340OsAffx.3009.1.S1_at11/112+30149093..30150461nitrate-induced NOI protein, putative, expressed
LOC_Os02g49350OsAffx.12563.1.S1_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49350Os.7446.1.S1_s_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49360Os.14816.1.S1_at11/112+30153349..30155848tRNA methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49207.1.S1_at--451--2751Chr02:30132282..30132306 (25 bp)
AAGACACCATTCAAGGGCTCTGGCA
LOC_Os02g49310
Os.49207.1.S1_at--507--8311Chr02:30132297..30132321 (25 bp)
GGCTCTGGCAACAGGGCAACACTGT
LOC_Os02g49310
Os.49207.1.S1_at--1122--1071Chr02:30132309..30132333 (25 bp)
AGGGCAACACTGTTCAATGTCATTG
LOC_Os02g49310
Os.49207.1.S1_at--248--2991Chr02:30132324..30132348 (25 bp)
AATGTCATTGGTCAGCCATTGCGCT
LOC_Os02g49310
Os.49207.1.S1_at--140--9791Chr02:30132391..30132415 (25 bp)
TAAGAGGTCTACTTGTGAAGGAGCC
LOC_Os02g49310
Os.49207.1.S1_at--998--8991Chr02:30132406..30132430 (25 bp)
TGAAGGAGCCCCAGCATCGGTTAGC
LOC_Os02g49310
Os.49207.1.S1_at--426--1531Chr02:30132460..30132484 (25 bp)
AGCATCCGTTCTTCGAAGGCGTAAA
LOC_Os02g49310
Os.49207.1.S1_at--56--2571Chr02:30132483..30132507 (25 bp)
AACTGGGCGTTGATCCGATGTGCAA
LOC_Os02g49310
Os.49207.1.S1_at--106--8691Chr02:30132501..30132525 (25 bp)
TGTGCAAGCCCACCGGAGGTACCAA
LOC_Os02g49310
Os.49207.1.S1_at--124--1451Chr02:30132604..30132628 (25 bp)
AGAAGGGTTCTGATGGCTACTTAGA
LOC_Os02g49310
Os.49207.1.S1_at--498--1771Chr02:30132748..30132772 (25 bp)
ACCTGTTTCTGTTATTTCCTGCATA
LOC_Os02g49310
Target Sequence 
AAGACACCATTCAAGGGCTCTGGCAACAGGGCAACACTGTTCAATGTCATTGGTCAGCCATTGCGCTTCCCGGAGTACCC
AATTGTCANCTTCTCAGCAAGAGATTTGATAAGAGGTCTACTTGTGAAGGAGCCCCAGCATCGGTTAGCTTACAAACGCG
GNGCCACAGAGATAANGCAGCATCCGTTCTTCGAAGGCGTAAACTGGGCGTTGATCCGATGTGCAAGCCCACCGGAGGTA
CCAAAGCCTGTNGAGATTGAGAGGNCACCAAAGTTGNCCCCATCCACATCTGGAACTACTGATGTGTCCAGTGGTNGCNC
CTCAGAAGGGTTCTGATGGCTACTTAGAGTTNGATTTTTTCTGATGAACATATGGATNTCGATATATATCGATTGTGCGA
TGAGATGTANNTNNCTNTANGTGTAGTGTTNNTGGCAGATGATAAGTGTNNNANNNNGNCCACTGCAACCTGTTTCTGTT
ATTTCCTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis