Browse Element(s) Details


OsAffx.3007.1.S1_at

Description tigr:9630.m04821
TID=OsAffx.3007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4928011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein
LOC_Os02g49250OsAffx.24796.1.S1_at11/112+30097917..30098762Myb-like DNA-binding domain containing protein
LOC_Os02g49260OsAffx.24797.1.S1_at11/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49260Os.51219.1.S1_at1/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os02g49280OsAffx.3007.1.S1_at11/112+30111406..30112504Protease inhibitor/seed storage/LTP family protein
LOC_Os02g49290Os.47463.1.S1_x_at6/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49290Os.14491.2.S1_x_at4/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49300NANA2+30122093..30125424transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49310Os.49207.1.S1_at11/112+30129487..30132803Protein kinase G11A, putative, expressed
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3007.1.S1_at--794--9051Chr02:30111967..30111991 (25 bp)
TGCATGACGCCGCTGATGTCCGTGA
LOC_Os02g49280
OsAffx.3007.1.S1_at--494--691Chr02:30111964..30111988 (25 bp)
ATGACGCCGCTGATGTCCGTGATGC
LOC_Os02g49280
OsAffx.3007.1.S1_at--444--1831Chr02:30111961..30111985 (25 bp)
ACGCCGCTGATGTCCGTGATGCCGT
LOC_Os02g49280
OsAffx.3007.1.S1_at--238--9291Chr02:30111949..30111973 (25 bp)
TCCGTGATGCCGTGCGCGGACTACC
LOC_Os02g49280
OsAffx.3007.1.S1_at--326--5751Chr02:30111883..30111907 (25 bp)
GACGGCTTCAGGTCGCTCGTGAGCA
LOC_Os02g49280
OsAffx.3007.1.S1_at--779--3631Chr02:30111878..30111902 (25 bp)
CTTCAGGTCGCTCGTGAGCACCGCG
LOC_Os02g49280
OsAffx.3007.1.S1_at--912--3351Chr02:30111803..30111827 (25 bp)
CACGCCCGTCGACCCGATGAAGATG
LOC_Os02g49280
OsAffx.3007.1.S1_at--776--4051Chr02:30111789..30111813 (25 bp)
CGATGAAGATGATGCTCCTCCCGAT
LOC_Os02g49280
OsAffx.3007.1.S1_at--435--671Chr02:30111787..30111811 (25 bp)
ATGAAGATGATGCTCCTCCCGATCA
LOC_Os02g49280
OsAffx.3007.1.S1_at--390--1311Chr02:30111783..30111807 (25 bp)
AGATGATGCTCCTCCCGATCACCTG
LOC_Os02g49280
OsAffx.3007.1.S1_at--475--591Chr02:30111751..30111775 (25 bp)
ATGCCACCACTGCAGACGCTGTTCA
LOC_Os02g49280
Target Sequence 
TGCATGACGCCGCTGATGTCCGTGATGCCGTGCGCGGACTACCTGACGAACACCGCCGTGCCGACGCCGCCGGCCACCTG
CTGCGACGGCTTCAGGTCGCTCGTGAGCACCGCGCCCATCTGCCTCTGCCACGGCATGAACGGCGATCTCAACAGCTTCC
TCCCCACGCCCGTCGACCCGATGAAGATGATGCTCCTCCCGATCACCTGCGGCGCCATGCCACCACTGCAGACGCTGTTC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis