Browse Element(s) Details


Os.55140.1.S1_s_at

Description gb:AK107565.1
DB_XREF= gi:32992774
TID=Os.55140.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C07, full insert sequence.
FL= gb:AK107565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4924010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein
LOC_Os02g49250OsAffx.24796.1.S1_at11/112+30097917..30098762Myb-like DNA-binding domain containing protein
LOC_Os02g49260OsAffx.24797.1.S1_at11/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49260Os.51219.1.S1_at1/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os02g49280OsAffx.3007.1.S1_at11/112+30111406..30112504Protease inhibitor/seed storage/LTP family protein
LOC_Os02g49290Os.47463.1.S1_x_at6/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49290Os.14491.2.S1_x_at4/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55140.1.S1_s_at--327--4951Chr02:30093682..30093706 (25 bp)
GCATCTCGGTCGGTTGCCGGATCAA
LOC_Os02g49240
Os.55140.1.S1_s_at--1004--7951Chr02:30093664..30093688 (25 bp)
GGATCAAGCACCACCGCCTGAGCGG
LOC_Os02g49240
Os.55140.1.S1_s_at--50--5811Chr02:30093521..30093545 (25 bp)
GACGCTCTCGCGTCGAGCTTGGATT
LOC_Os02g49240
Os.55140.1.S1_s_at--628--8571Chr02:30093502..30093526 (25 bp)
TGGATTCTTGCACGCTGGCCTCAGA
LOC_Os02g49240
Os.55140.1.S1_s_at--645--8111Chr02:30093462..30093486 (25 bp)
GGACGGCGACCTCGCGCTAGATTTA
LOC_Os02g49240
Os.55140.1.S1_s_at--1116--4851Chr02:30093447..30093471 (25 bp)
GCTAGATTTACCGTTCATGTCAGTT
LOC_Os02g49240
Os.55140.1.S1_s_at--453--1511Chr02:30093409..30093433 (25 bp)
AGCAGCCTCGCGCTAGATCGAGTTA
LOC_Os02g49240
Os.55140.1.S1_s_at--1094--6411Chr02:30093382..30093406 (25 bp)
GATCTACTTAGGTTGCATGCATATT
LOC_Os02g49240
Os.55140.1.S1_s_at--1138--10071Chr02:30093346..30093370 (25 bp)
TAGGTTACCAAATTAGCACGCATGT
LOC_Os02g49240
Os.55140.1.S1_s_at--764--5091Chr02:30093331..30093355 (25 bp)
GCACGCATGTTTGATCACGTCTCAA
LOC_Os02g49240
Os.55140.1.S1_s_at--697--5231Chr02:30093303..30093327 (25 bp)
GAATAAAGCTCTATGCTCACCCTAC
NONE
Target Sequence 
GCATCTCGGTCGGTTGCCGGATCAAGCACCACCGCCTGAGCGGCTTGGTCCCCGCCGCCGAGACGGGCGCCACTTGCCCG
CCGCCGGCCGCTGACTCGGCGGCCATGGAGGGCGGCGTCGCGGAGTCAGAGTCGCCGCCGCCGCCGCAGCACCCTCTCGC
CGACGCTCTCGCGTCGAGCTTGGATTCTTGCACGCTGGCCTCAGACACGGCGGATCCCGGGGACGGCGACCTCGCGCTAG
ATTTACCGTTCATGTCAGTTTGACAGAGGAGACAGCAGCCTCGCGCTAGATCGAGTTAGTGATCTACTTAGGTTGCATGC
ATATTTGATTTCAATTTAGGTTACCAAATTAGCACGCATGTTTGATCACGTCTCAATTTGAATAAAGCTCTATGCTCACC
CTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55140.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis