Browse Element(s) Details


Os.18189.1.S1_at

Description gb:AK073256.1
DB_XREF= gi:32983279
TID=Os.18189.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023H11, full insert sequence.
FL= gb:AK073256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4919011/11SNF5/SMARCB1/INI1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49130Os.27311.1.A1_at11/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.12558.1.S1_at9/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.8676.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.3509.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.22651.3.A1_x_at1/112+30038350..30041663expressed protein
LOC_Os02g49140Os.16235.1.S1_at10/112+30045802..30047497Glycosyltransferase 6, putative, expressed
LOC_Os02g49150Os.16748.1.S1_s_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49150OsAffx.12560.1.S1_x_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016568biological_processchromatin modification
GO:0005634cellular_componentnucleus
GO:0003682molecular_functionchromatin binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18189.1.S1_at--1157--10231Chr02:30068101..30068125 (25 bp)
TTTGGCAGCAAAGGGAGTGTCGTTC
LOC_Os02g49190
Os.18189.1.S1_at--984--7831Chr02:30068353..30068377 (25 bp)
GGTACTTGTATGAGCCTGTTGTAGA
LOC_Os02g49190
Os.18189.1.S1_at--815--1611Chr02:30068567..30068591 (25 bp)
AGCTGTAAACTGTACCGCATTTGAT
LOC_Os02g49190
Os.18189.1.S1_at--731--211Chr02:30068585..30068609 (25 bp)
ATTTGATGATCCTGACGTGTTGAAA
LOC_Os02g49190
Os.18189.1.S1_at--1132--6291Chr02:30068615..30068639 (25 bp)
GATGAGAGCCTCCAACCCATGTTAC
LOC_Os02g49190
Os.18189.1.S1_at--784--3511Chr02:30068632..30068656 (25 bp)
CATGTTACACCAATGCTGTTTGCAA
LOC_Os02g49190
Os.18189.1.S1_at--910--5131Chr02:30068653..30068677 (25 bp)
GCAAAGCTTTCTGGTTGTGACTGCA
LOC_Os02g49190
Os.18189.1.S1_at--1047--7911Chr02:30068665..30068689 (25 bp)
GGTTGTGACTGCAGACCTCAGGAAA
LOC_Os02g49190
Os.18189.1.S1_at--439--8351Chr02:30068723..30068747 (25 bp)
GGCGAGCATTAGGAGCATTAGGTAC
LOC_Os02g49190
Os.18189.1.S1_at--1068--6971Chr02:30068744..30068768 (25 bp)
GTACCTGGCTAGGTTAGCTCTGTTC
LOC_Os02g49190
Os.18189.1.S1_at--142--5431Chr02:30068810..30068834 (25 bp)
GAAGCCATGGAATGTGACCTACCTG
LOC_Os02g49190
Target Sequence 
TTTGGCAGCAAAGGGAGTGTCGTTCGGAAAAGGAAGGAATGGTACTTGTATGAGCCTGTTGTAGATGTCATAACTAATGA
GGAAGTTGGAGTAACTGATGCAACAGAGGAGATTAACTCCAGGAATGCATGAGCTGAAGCTGTAAACTGTACCGCATTTG
ATGATCCTGACGTGTTGAAAAGAAGGATGAGAGCCTCCAACCCATGTTACACCAATGCTGTTTGCAAAGCTTTCTGGTTG
TGACTGCAGACCTCAGGAAAGAAGNCATTTCAATGTTTGTGTTTGGAAGGGAGGGCGAGCATTAGGAGCATTAGGTACCT
GGCTAGGTTAGCTCTGTTCTGTAGATGTGTAATGTGTTGTACTCATAAAAAAACTGCATGGAAGCCATGGAATGTGACCT
ACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis