Browse Element(s) Details


OsAffx.12562.1.S1_at

Description tigr:9630.m04811
TID=OsAffx.12562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4922011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein
LOC_Os02g49250OsAffx.24796.1.S1_at11/112+30097917..30098762Myb-like DNA-binding domain containing protein
LOC_Os02g49260OsAffx.24797.1.S1_at11/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49260Os.51219.1.S1_at1/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12562.1.S1_at--355--5611Chr02:30081695..30081719 (25 bp)
GACAAAGTCACCAGAGACACCTCGT
LOC_Os02g49220
OsAffx.12562.1.S1_at--706--9671Chr02:30081688..30081712 (25 bp)
TCACCAGAGACACCTCGTTGTTGAC
LOC_Os02g49220
OsAffx.12562.1.S1_at--919--6651Chr02:30081368..30081693 (25 bp)
GTTGACGGCTTGGATGGTGCATCAC
LOC_Os02g49220
OsAffx.12562.1.S1_at--717--3611Chr02:30081360..30081384 (25 bp)
CTTGGATGGTGCATCACTCTGCAAT
LOC_Os02g49220
OsAffx.12562.1.S1_at--732--3771Chr02:30081344..30081368 (25 bp)
CTCTGCAATCTGCATCAGTGCAACT
LOC_Os02g49220
OsAffx.12562.1.S1_at--1129--3051Chr02:30081338..30081362 (25 bp)
AATCTGCATCAGTGCAACTGTGCCC
LOC_Os02g49220
OsAffx.12562.1.S1_at--1026--1931Chr02:30081322..30081346 (25 bp)
ACTGTGCCCCTTCGGTTACTTGAAG
LOC_Os02g49220
OsAffx.12562.1.S1_at--427--10611Chr02:30081312..30081336 (25 bp)
TTCGGTTACTTGAAGGCACAGTAGA
LOC_Os02g49220
OsAffx.12562.1.S1_at--870--2731Chr02:30081286..30081310 (25 bp)
AAGAATCGAGAAACACTAGTGCTTA
LOC_Os02g49220
OsAffx.12562.1.S1_at--307--10071Chr02:30081270..30081294 (25 bp)
TAGTGCTTAGCACAAGACACCTTGG
LOC_Os02g49220
OsAffx.12562.1.S1_at--689--5631Chr02:30081255..30081279 (25 bp)
GACACCTTGGACATGTTGATGTGGA
LOC_Os02g49220
Target Sequence 
GACAAAGTCACCAGAGACACCTCGTTGTTGACGGCTTGGATGGTGCATCACTCTGCAATCTGCATCAGTGCAACTGTGCC
CCTTCGGTTACTTGAAGGCACAGTAGAAAAGAATCGAGAAACACTAGTGCTTAGCACAAGACACCTTGGACATGTTGATG
TGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis