Browse Element(s) Details


Os.17655.1.S1_at

Description gb:AK066518.1
DB_XREF= gi:32976536
TID=Os.17655.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070M23, full insert sequence.
FL= gb:AK066518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4916010/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49120OsAffx.5954.1.S1_x_at6/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.5.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.3.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49130Os.27311.1.A1_at11/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.12558.1.S1_at9/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.8676.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.3509.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.22651.3.A1_x_at1/112+30038350..30041663expressed protein
LOC_Os02g49140Os.16235.1.S1_at10/112+30045802..30047497Glycosyltransferase 6, putative, expressed
LOC_Os02g49150Os.16748.1.S1_s_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49150OsAffx.12560.1.S1_x_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009880biological_processembryonic pattern specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17655.1.S1_at--131--4751Chr02:30059947..30059971 (25 bp)
GCTGTTCCTGACAAGCGTGAAGAGA
LOC_Os02g49160
Os.17655.1.S1_at--932--51Chr02:30059971..30059995 (25 bp)
ATTGAGGATTGCAAGAGCGGATGAC
LOC_Os02g49160
Os.17655.1.S1_at--715--4671Chr02:30059987..30060011 (25 bp)
GCGGATGACAAGTACTGCTATAGCT
LOC_Os02g49160
Os.17655.1.S1_at--93--1991Chr02:30060000..30060024 (25 bp)
ACTGCTATAGCTGTTGAATAATTGG
LOC_Os02g49160
Os.17655.1.S1_at--49--4351Chr02:30060029..30060053 (25 bp)
CCAGGATGGTCAATTAATTCTTCCA
LOC_Os02g49160
Os.17655.1.S1_at--479--6071Chr02:30060054..30060078 (25 bp)
GAGTTCTTGGATTTCATTCATTCTT
LOC_Os02g49160
Os.17655.1.S1_at--930--7931Chr02:30060062..30060086 (25 bp)
GGATTTCATTCATTCTTACTTTGCT
LOC_Os02g49160
Os.17655.1.S1_at--1024--10531Chr02:30060074..30060098 (25 bp)
TTCTTACTTTGCTCATTTTGGTGGA
LOC_Os02g49160
Os.17655.1.S1_at--633--211Chr02:30060108..30060132 (25 bp)
ATTTGAGATGATTGTTTTCGGGAGC
LOC_Os02g49160
Os.17655.1.S1_at--217--5231Chr02:30060253..30060277 (25 bp)
GAATAATTTATTCCGAACTGGCAAT
LOC_Os02g49160
Os.17655.1.S1_at--206--5471Chr02:30060267..30060291 (25 bp)
GAACTGGCAATTTTACTGTATGAAA
NONE
Target Sequence 
GCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTT
AACCAGGATGGTCAATTAATTCTTCCANGAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCANATT
TAGATTTGAGATGATTGTTTTCGGGAGCGNAAATTTACNTAGTAAAAGCATAGTGATATTGAGCNAGAGGATATTGTACA
AAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCNTTTTACTTCTCAGTCTAGAATAATTTA
TTCCGAACTGGCAATTTTACTGTATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis