Browse Element(s) Details


OsAffx.3005.1.S1_at

Description tigr:9630.m04810
TID=OsAffx.3005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4921011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49150Os.16748.1.S1_s_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49150OsAffx.12560.1.S1_x_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein
LOC_Os02g49250OsAffx.24796.1.S1_at11/112+30097917..30098762Myb-like DNA-binding domain containing protein
LOC_Os02g49260OsAffx.24797.1.S1_at11/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49260Os.51219.1.S1_at1/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3005.1.S1_at--85--5131Chr02:30077732..30077980 (25 bp)
GCACAATCAAGGCTAGTATCTGATA
LOC_Os02g49210
OsAffx.3005.1.S1_at--938--2731Chr02:30077696..30077720 (25 bp)
AAGAATGCCAATTTGCAGAACAATG
LOC_Os02g49210
OsAffx.3005.1.S1_at--712--3071Chr02:30077653..30077677 (25 bp)
AATCAGGTACAACTGTAACTCAGGG
LOC_Os02g49210
OsAffx.3005.1.S1_at--954--3171Chr02:30076323..30076347 (25 bp)
AATTGGATCAGAGATGTGCGAAAAT
LOC_Os02g49210
OsAffx.3005.1.S1_at--359--971Chr02:30076163..30076186 (24 bp)
AGGAGGACAAATGAGCTACACTAAC
LOC_Os02g49210
OsAffx.3005.1.S1_at--868--2231Chr02:30075866..30075889 (24 bp)
AAATTCCATGATTTTGGCAACAAGC
LOC_Os02g49210
OsAffx.3005.1.S1_at--261--1531Chr02:30075844..30075868 (25 bp)
AGCAGGTTTTCTCCTCAAGAGTCAC
LOC_Os02g49210
OsAffx.3005.1.S1_at--630--9491Chr02:30075835..30075859 (25 bp)
TCTCCTCAAGAGTCACATCAACATG
LOC_Os02g49210
OsAffx.3005.1.S1_at--920--5371Chr02:30075799..30075823 (25 bp)
GAAGAACAGATATCGACAGAACACT
LOC_Os02g49210
OsAffx.3005.1.S1_at--1065--10131Chr02:30075789..30075813 (25 bp)
TATCGACAGAACACTGGAGCTATGA
LOC_Os02g49210
OsAffx.3005.1.S1_at--922--8811Chr02:30075758..30075782 (25 bp)
TGATAGGTTATACAACAACAGCAAC
LOC_Os02g49210
Target Sequence 
GCACAATCAAGGCTAGTATCTGATAGTGAAAGTTTGAAGAATGCCAATTTGCAGAACAATGAAACTATGAAGAAAGAGCA
ATCAGGTACAACTGTAACTCAGGGGGCTGATAGAACAAAGTCTCAAGTAACAGGAAATAGAACTGAAGAATTAAGAAGAA
AGAAGACAGTTGAAGGATCTCATTACCTGCAGGATTTTGAAAAATGCAAAAAGTCAGGGACAATTGGATCAGAGATGTGC
GAAAATAAAGCACAACTACTTTATGATCAATACACATTTCTTAATGAAAATGAAAGACTAGGAGGACAAATGAGCTACAC
TAACCTCATGCAACAGATAATTCAAAGTCCACGTGTCAGCTTGCAAGCAAATGAAAATTCCATGATTTTGGCAACAAGCA
GGTTTTCTCCTCAAGAGTCACATCAACATGATAGATTGTATGAAGAACAGATATCGACAGAACACTGGAGCTATGAAGAA
TTTGATAGGTTATACAACAACAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis