Browse Element(s) Details


Os.3400.1.S1_s_at

Description gb:AB001888.1
DB_XREF= gi:3618319
TID=Os.3400.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.3400 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein, complete cds, clone:S3574.
PROD=zinc finger protein
FL= gb:AK071630.1 gb:AB001888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4923011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein
LOC_Os02g49250OsAffx.24796.1.S1_at11/112+30097917..30098762Myb-like DNA-binding domain containing protein
LOC_Os02g49260OsAffx.24797.1.S1_at11/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49260Os.51219.1.S1_at1/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os02g49280OsAffx.3007.1.S1_at11/112+30111406..30112504Protease inhibitor/seed storage/LTP family protein
LOC_Os02g49290Os.47463.1.S1_x_at6/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49290Os.14491.2.S1_x_at4/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3400.1.S1_s_at--526--2351Chr02:30092710..30092734 (25 bp)
AAAGCCTTTCACTCGATTGGTTTCG
LOC_Os02g49230
Os.3400.1.S1_s_at--316--7871Chr02:30092728..30092752 (25 bp)
GGTTTCGTCCAGTGTTCAAGTAGCA
LOC_Os02g49230
Os.3400.1.S1_s_at--1121--5091Chr02:30092781..30092805 (25 bp)
GCACGGCAAGCATGATCACTGGAGA
LOC_Os02g49230
Os.3400.1.S1_s_at--455--9771Chr02:30092934..30092958 (25 bp)
TAATGCTCCATTTTCTCCTGTACAG
LOC_Os02g49230
Os.3400.1.S1_s_at--721--4971Chr02:30092964..30092988 (25 bp)
GCATCTTCAGTTGCTTCTGGTTGAG
LOC_Os02g49230
Os.3400.1.S1_s_at--581--1311Chr02:30092987..30093011 (25 bp)
AGATGTCTGAATCACTCTCTACCAT
LOC_Os02g49230
Os.3400.1.S1_s_at--588--3771Chr02:30093001..30093025 (25 bp)
CTCTCTACCATCTGTGCATTAATCA
LOC_Os02g49230
Os.3400.1.S1_s_at--371--5091Chr02:30093062..30093086 (25 bp)
GCACCTGCTTCTGTTGTGATGTTTT
LOC_Os02g49230
Os.3400.1.S1_s_at--830--4731Chr02:30093095..30093119 (25 bp)
GCTGTCAGGCTGGATCTCTAGGTAA
LOC_Os02g49230
Os.3400.1.S1_s_at--337--3871Chr02:30093137..30093161 (25 bp)
CTGATGGAATTTGCACCGCTGTAAT
LOC_Os02g49230
Os.3400.1.S1_s_at--834--6591Chr02:30093190..30093214 (25 bp)
GATTGTTCTTCTGTCGTGTATGTAT
LOC_Os02g49230
Target Sequence 
AAAGCCTTTCACTCGATTGGTTTCGTCCAGTGTTCAAGTAGCAATTTTCAGCAGCTGATTTGATGTTGGTTGCACGGCAA
GCATGATCACTGGAGAACACAAGCAATTGCGGCAGACCTTGCAATTGAAAACGGGGAAAGGAAACCAAACGCTGTGATCA
AATCAAATTAATGAAANAAAAAANNNNGGAAAAAATAGGATGCAAACATGCGAGAAGCTCATGGATGGTAATGCTCCATT
TTCTCCTGTACAGTTCATGCATCTTCAGTTGCTTCTGGTTGAGATGTCTGAATCACTCTCTACCATCTGTGCATTAATCA
AATACAAATACATGGGCCTACNGCACGACGACGAACGCACCTGCTTCTGTTGTGATGTTTTGTGTTGCGGCTGTCAGGCT
GGATCTCTAGGTAACATGATTAATTATACTACTGATGGAATTTGCACCGCTGTAATATTATTTACGAATCACAATCTGCC
GTGGGATTGTTCTTCTGTCGTGTATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3400.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis