Browse Element(s) Details


Os.27513.1.A1_a_at

Description gb:AK066635.1
DB_XREF= gi:32976653
TID=Os.27513.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoenolpyruvate carboxylase (OSJNBa0016I09.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071A07, full insert sequence.
FL= gb:AK066635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1105411/11Phosphoenolpyruvate carboxylase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11010Os.32162.1.S1_at11/111+5872596..5874651Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g11020NANA1+5880808..5881374hypothetical protein
LOC_Os01g11030OsAffx.11005.2.S1_at11/111+5885172..5886574NA
LOC_Os01g11030OsAffx.11005.2.S1_x_at11/111+5885172..5886574NA
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed
LOC_Os01g11054Os.27513.1.A1_a_at11/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11054OsAffx.10695.1.S1_at1/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11080OsAffx.9938.1.S1_at11/111+5914965..5916014Transposable element protein, putative, Retrotrans_gag
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27513.1.A1_a_at--123--6691Chr01:5905775..5905799 (25 bp)
GTTGCTGGGCACAAGGATCTCCTGG
LOC_Os01g11054
Os.27513.1.A1_a_at--417--471Chr01:5905791..5905815 (25 bp)
ATCTCCTGGAGAGTGATCCGTACCT
LOC_Os01g11054
Os.27513.1.A1_a_at--216--6371Chr01:5905805..5905829 (25 bp)
GATCCGTACCTGAGGCAGCGGCTGA
LOC_Os01g11054
Os.27513.1.A1_a_at--460--611Chr01:5905829..5905853 (25 bp)
ATGCTGCGGGACTCGTACATCACGG
LOC_Os01g11054
Os.27513.1.A1_a_at--767--5711Chr01:5905838..5905862 (25 bp)
GACTCGTACATCACGGCGCTGAACG
LOC_Os01g11054
Os.27513.1.A1_a_at--582--4571Chr01:5905853..5905877 (25 bp)
GCGCTGAACGTGTGCCAGGCGTACA
LOC_Os01g11054
Os.27513.1.A1_a_at--163--8711Chr01:5905863..5905887 (25 bp)
TGTGCCAGGCGTACACGCTGAAGCG
LOC_Os01g11054
Os.27513.1.A1_a_at--469--7031Chr01:5905873..5905897 (25 bp)
GTACACGCTGAAGCGGATCCGGGAC
LOC_Os01g11054
Os.27513.1.A1_a_at--11--8711Chr01:5905929..5905953 (25 bp)
TGTCGAAGGAGCTTCTGGGCTCGTC
LOC_Os01g11054
Os.27513.1.A1_a_at--119--5411Chr01:5905975..5905999 (25 bp)
GAAGCTCAACCCAAACAGCGAGTAC
LOC_Os01g11054
Os.27513.1.A1_a_at--376--1851Chr01:5905998..5906022 (25 bp)
ACGACCCCGGGCTGGAGGACACGCT
LOC_Os01g11054
Target Sequence 
GTTGCTGGGCACAAGGATCTCCTGGAGAGTGATCCGTACCTGAGGCAGCGGCTGATGCTGCGGGACTCGTACATCACGGC
GCTGAACGTGTGCCAGGCGTACACGCTGAAGCGGATCCGGGACGGCGGGTTCAGGCCGGAGACGCGGCCGCCGCTGTCGA
AGGAGCTTCTGGGCTCGTCGGCGGTGGCGGAGAAGCTGGTGAAGCTCAACCCAAACAGCGAGTACGACCCCGGGCTGGAG
GACACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27513.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis