Browse Element(s) Details


Os.27557.1.S1_at

Description gb:AK103135.1
DB_XREF= gi:32988344
TID=Os.27557.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120D14, full insert sequence.
FL= gb:AK103135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2930010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29260NANA2+17377800..17382890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29270NANA2+17384524..17385650hypothetical protein
LOC_Os02g29280Os.54691.1.S1_x_at3/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_x_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29290NANA2+17397604..17398845hypothetical protein
LOC_Os02g29300Os.27557.1.S1_at10/112+17400342..17405250expressed protein
LOC_Os02g29310OsAffx.2791.1.S1_at11/112+17409434..17409856hypothetical protein
LOC_Os02g29320OsAffx.2792.1.S1_s_at11/112+17410542..17413326expressed protein
LOC_Os02g29330OsAffx.22940.2.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.1.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_x_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.3.S1_x_at9/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.2.S1_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.3.S1_x_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.18.S1_x_at6/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.31552.2.S1_at1/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27557.1.S1_at--336--251Chr02:17401586..17401610 (25 bp)
ATAGTTCGTAGGTTGAGGCCTCTCA
LOC_Os02g29300
Os.27557.1.S1_at--477--1571Chr02:17401537..17401561 (25 bp)
AGCTCGAGTTTTGTGACCGGTATCA
LOC_Os02g29300
Os.27557.1.S1_at--639--2971Chr02:17401454..17401478 (25 bp)
AATGGTTCCAAAATTGCTCCGCTGT
LOC_Os02g29300
Os.27557.1.S1_at--946--4791Chr02:17401439..17401463 (25 bp)
GCTCCGCTGTCCTTTGTCAGGAAAA
LOC_Os02g29300
Os.27557.1.S1_at--162--8151Chr02:17401420..17401444 (25 bp)
GGAAAAATCATGCAGTACCCGGTGA
LOC_Os02g29300
Os.27557.1.S1_at--75--5151NONE
GCAACCGGCCAGACTTTTGAACGAG
NONE
Os.27557.1.S1_at--825--2331Chr02:17400620..17400644 (25 bp)
AAAGAGTGGTTTACCCTGCATGGGC
LOC_Os02g29300
Os.27557.1.S1_at--1152--4991Chr02:17400597..17400621 (25 bp)
GCATGTCTGTCCAATCACTCAAGAG
LOC_Os02g29300
Os.27557.1.S1_at--687--8351Chr02:17400518..17400542 (25 bp)
GGCGGGATTCAGTCCAAATGGTAAC
LOC_Os02g29300
Os.27557.1.S1_at--990--7691Chr02:17400470..17400494 (25 bp)
GGGTGTCTTGACTTTCCAAAGGCTA
LOC_Os02g29300
Os.27557.1.S1_at--171--10371Chr02:17400370..17400394 (25 bp)
TTTTTCCCATTGACATGTCCAGTTG
LOC_Os02g29300
Target Sequence 
ATAGTTCGTAGGTTGAGGCCTCTCAGAGCTCAAGAGAAAATGCTGACAAAGCTCGAGTTTTGTGACCGGTATCAAAACTA
CATACAAGGGAAAAATACATACAAGCAACTGTACAGGGTTGCCATGGACTGCAATGGTTCCAAAATTGCTCCGCTGTCCT
TTGTCAGGAAAAATCATGCAGTACCCGGTGATAATTGCAACCGGCCAGACTTTTGAACGAGTCTACATCAAAGAGTGGTT
TACCCTGCATGGGCATGTCTGTCCAATCACTCAAGAGCCTGTTTATCAATTGTTCTAAGGAATCACAGATTACGTGATTA
TTTGGAATATTGGCGGGATTCAGTCCAAATGGTAACATCCAAGGTCACGACATGATGAAGGGTGTCTTGACTTTCCAAAG
GCTACTATTACTTGTGCAGAGTGTTGCTGCTATGTAAAAAGACAAGAATGTAATTGAATTCATATTTTCAGTGTTGATTT
TTTTCCCATTGACATGTCCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis