Browse Element(s) Details


Os.27565.1.S1_a_at

Description gb:AK071584.1
DB_XREF= gi:32981607
TID=Os.27565.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104P03, full insert sequence.
FL= gb:AK071584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3382011/11L1 Lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33790OsAffx.19542.3.S1_x_at7/115+19827393..19831614retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33800OsAffx.4343.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33800OsAffx.15708.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33810Os.19407.1.S1_at11/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.45957.3.S1_x_at3/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.49445.1.S1_at1/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33820Os.27565.1.S1_a_at11/115+19851468..19855093L1 Lipase, putative, expressed
LOC_Os05g33830NANA5+19870231..19870920Zinc finger, C3HC4 type family protein
LOC_Os05g33840Os.7505.2.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840Os.7505.1.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840OsAffx.3991.1.S1_at1/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27565.1.S1_a_at--771--5211Chr05:19852451..19852475 (25 bp)
GAATTACAGTGCCTTCAAGCGTCCT
LOC_Os05g33820
Os.27565.1.S1_a_at--619--2551Chr05:19852435..19852459 (25 bp)
AAGCGTCCTTGGAATTCACCCCATG
LOC_Os05g33820
Os.27565.1.S1_a_at--1086--2971Chr05:19852390..19852414 (25 bp)
AATGTGTATGTGGAGGCACCCTCAA
LOC_Os05g33820
Os.27565.1.S1_a_at--307--9711Chr05:19852369..19852393 (25 bp)
TCAAAATGCACCTCTACCTTACAAA
LOC_Os05g33820
Os.27565.1.S1_a_at--559--10271Chr05:19852172..19852196 (25 bp)
TTTGAACACAATCTCCATGACGCAC
LOC_Os05g33820
Os.27565.1.S1_a_at--678--10671Chr05:19852097..19852121 (25 bp)
TTGCCATCCTTTGCAGCCTGGGATA
LOC_Os05g33820
Os.27565.1.S1_a_at--713--6211Chr05:19851815..19851839 (25 bp)
GAGGCTGATCACATTCTTTTCATTG
LOC_Os05g33820
Os.27565.1.S1_a_at--718--2331Chr05:19851781..19851805 (25 bp)
AAAGAGCCGGAGTGCAGTTTGATTT
LOC_Os05g33820
Os.27565.1.S1_a_at--649--6231Chr05:19851749..19851773 (25 bp)
GATGGCATTTTCCAACGGTGCAGAA
LOC_Os05g33820
Os.27565.1.S1_a_at--207--2351Chr05:19851726..19851750 (25 bp)
AAAGCACGCATTTAGGAGGAGCCCC
LOC_Os05g33820
Os.27565.1.S1_a_at--1053--5231Chr05:19851611..19851635 (25 bp)
GAATCACGACGGTTTTTCTGCTTCT
LOC_Os05g33820
Target Sequence 
GAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCNTCCAAATGTGTATGTGGAGGCAC
CCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTC
CATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTG
GGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGAT
TTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAG
TCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGT
TTTTCTGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27565.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis