Browse Element(s) Details


Os.27610.1.S1_at

Description gb:AK068845.1
DB_XREF= gi:32978870
TID=Os.27610.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013166D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013166D16, full insert sequence.
FL= gb:AK068845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g423006/11Potassium transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42284NANA12+26260271..26261077hypothetical protein
LOC_Os12g42290OsAffx.32154.1.S1_at11/1112+26264717..26265314hypothetical protein
LOC_Os12g42300Os.27610.1.S1_at6/1112+26266327..26272534Potassium transporter, putative, expressed
LOC_Os12g42310Os.26556.1.S2_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42310Os.26556.1.S1_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42319OsAffx.9066.1.S1_x_at1/1112+26284523..26285551NA
LOC_Os12g42319Os.48426.1.A1_at1/1112+26284523..26285551NA
LOC_Os12g42330OsAffx.20088.1.S1_at11/1112+26286339..26288393hypothetical protein
LOC_Os12g42340OsAffx.32155.1.S1_x_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42340OsAffx.32155.1.S1_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42360NANA12+26297004..26297426hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0015079molecular_functionpotassium ion transporter activity
GO:0015386molecular_functionpotassium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27610.1.S1_at--914--6471Chr12:26266786..26266810 (25 bp)
GATACTCATATACCTACTGATGCAG
LOC_Os12g42300
Os.27610.1.S1_at--1132--8851Chr12:26266769..26266793 (25 bp)
TGATGCAGCTCAGAGTGCCAGACTG
LOC_Os12g42300
Os.27610.1.S1_at--171--3471Chr12:26266701..26266725 (25 bp)
CAGGACCCTTAATTTGTTCAGTTAG
LOC_Os12g42300
Os.27610.1.S1_at--383--10031Chr12:26266655..26266679 (25 bp)
TAGATGCACATTCCTTACACAATTG
LOC_Os12g42300
Os.27610.1.S1_at--766--6871Chr12:26266626..26266650 (25 bp)
GTATTTGTAGCGTATATCGGACCGA
LOC_Os12g42300
Os.27610.1.S1_at--808--8091Chr12:26266608..26266632 (25 bp)
GGACCGAACATTAATTCCTGTACCA
LOC_Os12g42300
Os.27610.1.S1_at--665--9131NONE
TGCGATCTGATTGCGCGTTCGTGAA
NONE
Os.27610.1.S1_at--499--7511NONE
GTGGTTAATTGGTCCGATCAACTCT
NONE
Os.27610.1.S1_at--214--1011NONE
AGGATATGATTTGCACCGGAGCTGT
NONE
Os.27610.1.S1_at--114--8091NONE
GGAGCTGTGCACAATCATTCACATT
NONE
Os.27610.1.S1_at--834--8951NONE
TGACATGGTACTTGCACCTTGAGCC
NONE
Target Sequence 
GATACTCATATACCTACTGATGCAGCTCAGAGTGCCAGACTGAAGGATCACCATCCAGAATTCAGAATAGCATTTTTACT
TTTTACAGGACCCTTAATTTGTTCAGTTAGGACGACACCTATATGCATATATAGATGCACATTCCTTACACAATTGTGCT
GTATTTGTAGCGTATATCGGACCGAACATTAATTCCTGTACCAATTCAGGTACGCACAGAGAATTANAGAAATAGTATTN
GCAGTCATCGNGGATTTGTGATATGTCGAATTTCTACCATTCTAATATATTGACGTGCGATCTGATTGCGCGTTCGTGAA
AAAAAAGAATTTCTACCATTAAAAATGGTTAAAATAAATGAGTACGAACATCGGATTTCTGTGGTTAATTGGTCCGATCA
ACTCTAGGATATGATTTGCACCGGAGCTGTGCACAATCATTCACATTGACATGGTACTTGCACCTTGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis