Browse Element(s) Details


OsAffx.32154.1.S1_at

Description tigr:9640.m04155
TID=OsAffx.32154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4229011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42284NANA12+26260271..26261077hypothetical protein
LOC_Os12g42290OsAffx.32154.1.S1_at11/1112+26264717..26265314hypothetical protein
LOC_Os12g42300Os.27610.1.S1_at6/1112+26266327..26272534Potassium transporter, putative, expressed
LOC_Os12g42310Os.26556.1.S2_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42310Os.26556.1.S1_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42319OsAffx.9066.1.S1_x_at1/1112+26284523..26285551NA
LOC_Os12g42319Os.48426.1.A1_at1/1112+26284523..26285551NA
LOC_Os12g42330OsAffx.20088.1.S1_at11/1112+26286339..26288393hypothetical protein
LOC_Os12g42340OsAffx.32155.1.S1_x_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42340OsAffx.32155.1.S1_at11/1112+26289786..26293447F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32154.1.S1_at--842--1691Chr12:26264830..26264852 (23 bp)
AGCCACCACCATTACTCATCAGGAG
LOC_Os12g42290
OsAffx.32154.1.S1_at--1086--1711Chr12:26264834..26264976 (25 bp)
ACCACCATTACTCATCAGGAGATGA
LOC_Os12g42290
OsAffx.32154.1.S1_at--801--391Chr12:26264967..26264989 (23 bp)
ATCAGGAGATGAACGACAATGGTGC
LOC_Os12g42290
OsAffx.32154.1.S1_at--135--8991Chr12:26264974..26264998 (25 bp)
TGAACGACAATGGTGCGGCGGTGGC
LOC_Os12g42290
OsAffx.32154.1.S1_at--669--6231Chr12:26265044..26265068 (25 bp)
GATGGTTGGGTCGAGGCCACCGGAC
LOC_Os12g42290
OsAffx.32154.1.S1_at--940--6051Chr12:26265077..26265101 (25 bp)
GAGTTGCGGGCCGTCGTGCGTAGGC
LOC_Os12g42290
OsAffx.32154.1.S1_at--919--4471Chr12:26265149..26265173 (25 bp)
GCCGGCGCCGACAGATGCAGGTGCA
LOC_Os12g42290
OsAffx.32154.1.S1_at--83--4611Chr12:26265226..26265250 (25 bp)
GCGACGACTACAAGCCGCTACGCTG
LOC_Os12g42290
OsAffx.32154.1.S1_at--450--5691Chr12:26265231..26265255 (25 bp)
GACTACAAGCCGCTACGCTGGGAGT
LOC_Os12g42290
OsAffx.32154.1.S1_at--211--2671Chr12:26265237..26265261 (25 bp)
AAGCCGCTACGCTGGGAGTGCAAGT
LOC_Os12g42290
OsAffx.32154.1.S1_at--24--4231Chr12:26265240..26265264 (25 bp)
CCGCTACGCTGGGAGTGCAAGTGCC
LOC_Os12g42290
Target Sequence 
AGCCACCACCATTACTCATCAGGAGATGAACGACAATGGTGCGGCGGTGGCGGCGACGGCGATGTCGGTGCAGGGGGAGG
CGCAGCAGCAGCAGGTGATGGTTGGGTCGAGGCCACCGGACTGCACGGGGAGTTGCGGGCCGTCGTGCGTAGGCCGCTGC
GAGGCGGTGCTGGTGCGGCCCGTCCACCCACCGAAGCCGCCGCCGGCGCCGACAGATGCAGGTGCAGGTGCAGCGGCGCC
GCCGGTGAAGGAGGTCGGTGACGTCGGCGGCGGCGGCGGCGACGACTACAAGCCGCTACGCTGGGAGTGCAAGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis