Browse Element(s) Details


OsAffx.20088.1.S1_at

Description tigr:9640.m04159
TID=OsAffx.20088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4233011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42290OsAffx.32154.1.S1_at11/1112+26264717..26265314hypothetical protein
LOC_Os12g42300Os.27610.1.S1_at6/1112+26266327..26272534Potassium transporter, putative, expressed
LOC_Os12g42310Os.26556.1.S2_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42310Os.26556.1.S1_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42319OsAffx.9066.1.S1_x_at1/1112+26284523..26285551NA
LOC_Os12g42319Os.48426.1.A1_at1/1112+26284523..26285551NA
LOC_Os12g42330OsAffx.20088.1.S1_at11/1112+26286339..26288393hypothetical protein
LOC_Os12g42340OsAffx.32155.1.S1_x_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42340OsAffx.32155.1.S1_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42360NANA12+26297004..26297426hypothetical protein
LOC_Os12g42370Os.10057.1.S1_at11/1112+26300655..26304551expressed protein
LOC_Os12g42370Os.7867.1.S1_x_at1/1112+26300655..26304551expressed protein
LOC_Os12g42380Os.9126.1.S2_at6/1112+26305856..26308219expressed protein
LOC_Os12g42390Os.9126.1.S2_at1/1112+26311474..26311860expressed protein
LOC_Os12g42400Os.22707.1.S1_at11/1112+26313290..26317662CCAAT-binding transcription factor subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20088.1.S1_at--900--6111Chr12:26287734..26287758 (25 bp)
GAGTGATTCGGGAAGCTCCAACTAT
LOC_Os12g42330
OsAffx.20088.1.S1_at--364--711Chr12:26287757..26287781 (25 bp)
ATGATGTTGATATTCGCTGCTGCTC
LOC_Os12g42330
OsAffx.20088.1.S1_at--491--4771Chr12:26287775..26287799 (25 bp)
GCTGCTCTACTCACATTGGTTGTTA
LOC_Os12g42330
OsAffx.20088.1.S1_at--320--9591Chr12:26287985..26288009 (25 bp)
TCTTGTCTGCAAATTCGAGGATCCC
LOC_Os12g42330
OsAffx.20088.1.S1_at--179--5171Chr12:26288044..26288068 (25 bp)
GCAACCTCTGTCTCAGGGATTTTGT
LOC_Os12g42330
OsAffx.20088.1.S1_at--1137--4911Chr12:26288140..26288164 (25 bp)
GCTTGCCGGTGGGTGTTGATCTCAA
LOC_Os12g42330
OsAffx.20088.1.S1_at--781--7411Chr12:26288152..26288176 (25 bp)
GTGTTGATCTCAATCGGGCTACTCC
LOC_Os12g42330
OsAffx.20088.1.S1_at--980--4251Chr12:26288203..26288227 (25 bp)
CCTGGTATTTCTCGTCGGCGGTGAA
LOC_Os12g42330
OsAffx.20088.1.S1_at--841--5011Chr12:26288236..26288260 (25 bp)
GCAGGGTACATCTGTTCTACTACAA
LOC_Os12g42330
OsAffx.20088.1.S1_at--1089--5991Chr12:26288284..26288308 (25 bp)
GAGAGCCTACGGTCACGGAGGTCAT
LOC_Os12g42330
OsAffx.20088.1.S1_at--438--1931Chr12:26288298..26288322 (25 bp)
ACGGAGGTCATCCATGTCTTGTACC
LOC_Os12g42330
Target Sequence 
GAGTGATTCGGGAAGCTCCAACTATGATGTTGATATTCGCTGCTGCTCTACTCACATTGGTTGTTATCAGAGGTGGCAGG
AGGATGGGGGCAGGAGGTCAGAATCAGCGGGGTGATGAGGAGGAAGATCAGACTAAGTGTCTTGTCTGCAAATTCGAGGA
TCCCGTGTTCCGCCTCGCCTGCTGCAACAAGGTCCTCTGCAACCTCTGTCTCAGGGATTTTGTCAGGACAATGCATGGTG
AGTGCACCCGCGGCCTCAGCGCCGGCTGCATCCTCTCCCTGCGGCCCCCGGAGAGCTTGCCGGTGGGTGTTGATCTCAAT
CGGGCTACTCCCTATCAGCATGTTCCCGAGTTCCCTCCCTGGTATTTCTCGTCGGCGGTGAAGAAGAATAGCAGGGTACA
TCTGTTCTACTACAACGTCAAGGAGCTGGAGGAAGGCAGAGAGCCTACGGTCACGGAGGTCATCCATGTCTTGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis