Browse Element(s) Details


Os.22707.1.S1_at

Description gb:AK073742.1
DB_XREF= gi:32983765
TID=Os.22707.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067G24, full insert sequence.
FL= gb:AK073742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4240011/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42330OsAffx.20088.1.S1_at11/1112+26286339..26288393hypothetical protein
LOC_Os12g42340OsAffx.32155.1.S1_x_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42340OsAffx.32155.1.S1_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42360NANA12+26297004..26297426hypothetical protein
LOC_Os12g42370Os.10057.1.S1_at11/1112+26300655..26304551expressed protein
LOC_Os12g42370Os.7867.1.S1_x_at1/1112+26300655..26304551expressed protein
LOC_Os12g42380Os.9126.1.S2_at6/1112+26305856..26308219expressed protein
LOC_Os12g42390Os.9126.1.S2_at1/1112+26311474..26311860expressed protein
LOC_Os12g42400Os.22707.1.S1_at11/1112+26313290..26317662CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os12g42410OsAffx.32156.1.S1_at11/1112+26325237..26326071hypothetical protein
LOC_Os12g42420Os.21335.1.A1_at10/1112+26329666..26331819expressed protein
LOC_Os12g42430Os.47920.1.S1_at11/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42430Os.41841.1.S1_at1/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22707.1.S1_at--201--7371Chr12:26313858..26313882 (25 bp)
GTGACCTCCTCAAAGCATGACTAGA
LOC_Os12g42400
Os.22707.1.S1_at--120--1071Chr12:26313759..26313783 (25 bp)
AGGGATTGTCCCTGCTGGTATTGGC
LOC_Os12g42400
Os.22707.1.S1_at--311--3911Chr12:26313745..26313769 (25 bp)
CTGGTATTGGCTGTCTGTAGGCAAC
LOC_Os12g42400
Os.22707.1.S1_at--324--111Chr12:26313718..26313742 (25 bp)
ATTCTTGGCTGATCGGTTCCGCTCA
LOC_Os12g42400
Os.22707.1.S1_at--1101--5511Chr12:26313677..26313701 (25 bp)
GAAACTCCAGCACCGGTTTCTGGGA
LOC_Os12g42400
Os.22707.1.S1_at--1010--10291Chr12:26313661..26313685 (25 bp)
TTTCTGGGATCCTGCGGTGATCAGA
LOC_Os12g42400
Os.22707.1.S1_at--1053--8831Chr12:26313644..26313668 (25 bp)
TGATCAGAACAACCCATCGCGTGTA
LOC_Os12g42400
Os.22707.1.S1_at--244--631Chr12:26313599..26313623 (25 bp)
ATGCTATGCTGTTACTGCTTGCTAC
LOC_Os12g42400
Os.22707.1.S1_at--944--4911Chr12:26313583..26313607 (25 bp)
GCTTGCTACCATTATCTGAACTGCT
LOC_Os12g42400
Os.22707.1.S1_at--225--7751Chr12:26313481..26313505 (25 bp)
GGTGTGCTTGTATCCTGATAACTAT
LOC_Os12g42400
Os.22707.1.S1_at--47--8311Chr12:26313440..26313464 (25 bp)
GGCTTTGTTGATCTACTGAACTACT
LOC_Os12g42400
Target Sequence 
GTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCAGCCGAAGCNGGCAAACATCAGCAGTTTCTGCTGGATN
CATTGCCCAGCTCCAGNTCAGGGATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCC
GCTCATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGATCCTGCGGTGATCAGAACAACCCATCGCGTGTAA
AAAAAAAAAAAAATCATCTATGCTATGCTGTTACTGCTTGCTACCATTATCTGAACTGCTACTACTAGGTAGCAAGCTTA
ATCTGGCAAGGTAAATAAAGTCTGGAACTTTGNACTGGTTCCAGTGGTGATGATTGTGGTGTGCTTGTATCCTGATAACT
ATTGTGAGTTTGAGANCTGGCTTTGTTGATCTACTGAACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis