Browse Element(s) Details


OsAffx.32156.1.S1_at

Description tigr:9640.m04166
TID=OsAffx.32156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4241011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42370Os.10057.1.S1_at11/1112+26300655..26304551expressed protein
LOC_Os12g42370Os.7867.1.S1_x_at1/1112+26300655..26304551expressed protein
LOC_Os12g42380Os.9126.1.S2_at6/1112+26305856..26308219expressed protein
LOC_Os12g42390Os.9126.1.S2_at1/1112+26311474..26311860expressed protein
LOC_Os12g42400Os.22707.1.S1_at11/1112+26313290..26317662CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os12g42410OsAffx.32156.1.S1_at11/1112+26325237..26326071hypothetical protein
LOC_Os12g42420Os.21335.1.A1_at10/1112+26329666..26331819expressed protein
LOC_Os12g42430Os.47920.1.S1_at11/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42430Os.41841.1.S1_at1/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42440OsAffx.7864.1.S1_at11/1112+26344262..26346243DnaJ protein homolog 2, putative, expressed
LOC_Os12g42450NANA12+26348073..26350606retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32156.1.S1_at--602--8271Chr12:26326004..26326028 (25 bp)
GGCATGCAATTTATCGGCTTCGGCT
LOC_Os12g42410
OsAffx.32156.1.S1_at--215--10611Chr12:26325986..26326010 (25 bp)
TTCGGCTTGTGGCTAGATTGATGAT
LOC_Os12g42410
OsAffx.32156.1.S1_at--51--4351Chr12:26325901..26325925 (25 bp)
CCACGGGTGGACTTTTGTTTCTGAT
LOC_Os12g42410
OsAffx.32156.1.S1_at--993--2891Chr12:26325862..26325886 (25 bp)
AAGGTGCTGCATGATCGACTGCTAC
LOC_Os12g42410
OsAffx.32156.1.S1_at--431--9371Chr12:26325848..26325872 (25 bp)
TCGACTGCTACGGAGGTGACGCACA
LOC_Os12g42410
OsAffx.32156.1.S1_at--382--5571Chr12:26325807..26325831 (25 bp)
GAAAGACTCAACATGGTTCGACAGA
LOC_Os12g42410
OsAffx.32156.1.S1_at--498--10631Chr12:26325791..26325815 (25 bp)
TTCGACAGAGAACAACGGCACTTGT
LOC_Os12g42410
OsAffx.32156.1.S1_at--502--3951Chr12:26325776..26325800 (25 bp)
CGGCACTTGTCGTTGGTGAGATCGA
LOC_Os12g42410
OsAffx.32156.1.S1_at--629--8991Chr12:26325707..26325731 (25 bp)
TGAAGGCTCGGAAGTCACTGGACAT
LOC_Os12g42410
OsAffx.32156.1.S1_at--929--2111Chr12:26325686..26325710 (25 bp)
ACATGGCGGTGTGCACGTACTGTGT
LOC_Os12g42410
OsAffx.32156.1.S1_at--175--7011Chr12:26325670..26325694 (25 bp)
GTACTGTGTCGAAGCCAGGGACCAT
LOC_Os12g42410
Target Sequence 
GGCATGCAATTTATCGGCTTCGGCTTGTGGCTAGATTGATGATGGTCAACCGAAGGTCGGAGCGGGTTGCGGGCTCGAGG
TGGAGCAGCAACAGTGGTGTTAGCCACGGGTGGACTTTTGTTTCTGATTTGGAGGTGTTGACAAGGTGCTGCATGATCGA
CTGCTACGGAGGTGACGCACAGCGACAGGTGTGGCGGGAAAGACTCAACATGGTTCGACAGAGAACAACGGCACTTGTCG
TTGGTGAGATCGAAGGATGTGTTGAGGGCTGGCACTGGAAGTTGTCGGGAAGGTGCGTGAAGGCTCGGAAGTCACTGGAC
ATGGCGGTGTGCACGTACTGTGTCGAAGCCAGGGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis