Browse Element(s) Details


Os.21335.1.A1_at

Description gb:BQ908699
DB_XREF= gi:22307477
DB_XREF=T013D02
CLONE=T013D02
TID=Os.21335.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21335 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49085 (A.thaliana) T49085 hypothetical protein F4F15.170 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4242010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42380Os.9126.1.S2_at6/1112+26305856..26308219expressed protein
LOC_Os12g42390Os.9126.1.S2_at1/1112+26311474..26311860expressed protein
LOC_Os12g42400Os.22707.1.S1_at11/1112+26313290..26317662CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os12g42410OsAffx.32156.1.S1_at11/1112+26325237..26326071hypothetical protein
LOC_Os12g42420Os.21335.1.A1_at10/1112+26329666..26331819expressed protein
LOC_Os12g42430Os.47920.1.S1_at11/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42430Os.41841.1.S1_at1/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42440OsAffx.7864.1.S1_at11/1112+26344262..26346243DnaJ protein homolog 2, putative, expressed
LOC_Os12g42450NANA12+26348073..26350606retrotransposon protein, putative, unclassified
LOC_Os12g42460OsAffx.25357.1.S1_at1/1112+26351256..26353811hypothetical protein
LOC_Os12g42470OsAffx.32157.1.S1_at11/1112+26354035..26354659hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21335.1.A1_at--814--3551NONE
CATCAGGGAGCTCAGGAAGTCTAAT
NONE
Os.21335.1.A1_at--620--9771Chr12:26330495..26330518 (24 bp)
TAATGGGACTCACTCCTACATGTTC
LOC_Os12g42420
Os.21335.1.A1_at--150--4051Chr12:26330453..26330477 (25 bp)
CGATTGCCTCAAGCCACTGATGGAG
LOC_Os12g42420
Os.21335.1.A1_at--571--351Chr12:26330024..26330048 (25 bp)
ATAAGCTGATCCATCCATACCCTTG
LOC_Os12g42420
Os.21335.1.A1_at--1114--5991Chr12:26329988..26330012 (25 bp)
GAGAGTACAAACCAGGACCAAGCCT
LOC_Os12g42420
Os.21335.1.A1_at--453--6811Chr12:26329952..26329976 (25 bp)
GTTTTCTTCAACTGCACTCGTCAAA
LOC_Os12g42420
Os.21335.1.A1_at--923--2431Chr12:26329929..26329953 (25 bp)
AAAAGATGGTGCTTCTCGAGAGAGC
LOC_Os12g42420
Os.21335.1.A1_at--393--3391Chr12:26329873..26329897 (25 bp)
CAGCTGCCTCCTATGTGAGTATTTT
LOC_Os12g42420
Os.21335.1.A1_at--209--6811Chr12:26329834..26329858 (25 bp)
GTTTTCCCTTTCGAATTTGAGCTCA
LOC_Os12g42420
Os.21335.1.A1_at--147--6791Chr12:26329754..26329778 (25 bp)
GTTAGCATGATCATCCTATGTATTA
LOC_Os12g42420
Os.21335.1.A1_at--864--5511Chr12:26329722..26329746 (25 bp)
GAAAATCTGTCGATACATGCAGTGA
LOC_Os12g42420
Target Sequence 
CATCAGGGAGCTCAGGAAGTCTAATGGGACTCACTCCTACATGTTCGCGCGCAAATTCGCGCCCGATTGCCTCAAGCCAC
TGATGGAGATCGCCGACTCCGTCATCCTGCGAGACTAGATGAATGATGCTGTGTTTGCAAGAGATGAATGCAATGAGGGC
TGAGATGTGATGAACAAGCATAAGCTGATCCATCCATACCCTTGCAGATTCTCCAGAGAGTACAAACCAGGACCAAGCCT
TGGTTTGCTTTGTTTTCTTCAACTGCACTCGTCAAAAAGATGGTGCTTCTCGAGAGAGCATGATGGTTGGTGTTGGTGGC
NAAAGGNCCCCAGCTGCCTCCTATGTGAGTATTTTTCTCTGNTATCTTTTGTTTTCCCTTTCGAATTTGAGCTCAAGTGG
TGGCCNAAATGAGGAGGGGAGAAGGTTGTTGGCACGTAATTAGAGTAGTAGTTAGCATGATCATCCTATGTATTACATGG
AGGAAAATCTGTCGATACATGCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21335.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis