Browse Element(s) Details


Os.27616.1.S1_at

Description gb:AK060533.1
DB_XREF= gi:32970551
TID=Os.27616.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A05, full insert sequence.
FL= gb:AK060533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3485010/11Maf family protein, putative, expressed
LOC_Os11g347701/11Maf-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34820Os.9098.1.S1_at11/1111+19895836..19904170Zinc knuckle family protein, expressed
LOC_Os11g34830NANA11+19906539..19913611ABC1 family protein
LOC_Os11g34840NANA11+19915274..19917823expressed protein
LOC_Os11g34850Os.27616.1.S1_at10/1111+19918770..19922297Maf family protein, putative, expressed
LOC_Os11g34860Os.16466.1.S1_at11/1111+19924659..19930996ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os11g34870OsAffx.7294.1.S1_at10/1111+19932099..19935754expressed protein
LOC_Os11g34870OsAffx.19160.1.A1_at5/1111+19932099..19935754expressed protein
LOC_Os11g34880Os.54278.1.S1_x_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34880OsAffx.19161.1.S1_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27616.1.S1_at--833--8572Chr11:19919142..19919165 (24 bp)
TGGTTGGTTCTAGTGACAGTGTAAT
LOC_Os11g34850
Os.27616.1.S1_at--357--131Chr11:19919086..19919110 (25 bp)
ATTCAGGATGCATTGTCCGCTTAGC
LOC_Os11g34850
Os.27616.1.S1_at--1015--4931Chr11:19919077..19919101 (25 bp)
GCATTGTCCGCTTAGCCTAGTAATA
LOC_Os11g34850
Os.27616.1.S1_at--203--4311Chr11:19919062..19919086 (25 bp)
CCTAGTAATATTTGGCGCTCTGATT
LOC_Os11g34850
Os.27616.1.S1_at--1076--8391Chr11:19919049..19919073 (25 bp)
GGCGCTCTGATTATTTATCACATTA
LOC_Os11g34850
Os.27616.1.S1_at--1083--6891Chr11:19918976..19919000 (25 bp)
GTATCTCATAGCCATTTTTTTAGTT
LOC_Os11g34850
Os.27616.1.S1_at--552--1391Chr11:19918914..19918938 (25 bp)
AGACGCATGGTGTGCAAGAACACTC
LOC_Os11g34850
Os.27616.1.S1_at--186--9011Chr11:19918902..19918926 (25 bp)
TGCAAGAACACTCGAGTCCCTCTAT
LOC_Os11g34850
Os.27616.1.S1_at--749--6051Chr11:19918864..19918888 (25 bp)
GAGATTCTATCATTGTACTACTTAC
LOC_Os11g34850
Os.27616.1.S1_at--758--5411Chr11:19918813..19918837 (25 bp)
GAAGCGTTCAATCAATATCTCCATG
LOC_Os11g34850
Os.27616.1.S1_at--4--2351Chr11:19918770..19918794 (25 bp)
AAAGAACTCGCAATTTTTACATATT
NONE
Target Sequence 
TGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAG
CCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGT
ATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTG
TGCAAGAACACTCGAGTCCCTCTATNTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGANNGNATATAC
TGTCATTGTGAAGCGTTCAATCAATATCTCCATGGGGAATGAGAATGTTGCAAAAGAACTCGCAATTTTTACATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis