Browse Element(s) Details


Os.16466.1.S1_at

Description gb:AK072007.1
DB_XREF= gi:32982030
TID=Os.16466.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098F24, full insert sequence.
FL= gb:AK072007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3486011/11ankryin repeat S-palmitoyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34820Os.9098.1.S1_at11/1111+19895836..19904170Zinc knuckle family protein, expressed
LOC_Os11g34830NANA11+19906539..19913611ABC1 family protein
LOC_Os11g34840NANA11+19915274..19917823expressed protein
LOC_Os11g34850Os.27616.1.S1_at10/1111+19918770..19922297Maf family protein, putative, expressed
LOC_Os11g34860Os.16466.1.S1_at11/1111+19924659..19930996ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os11g34870OsAffx.7294.1.S1_at10/1111+19932099..19935754expressed protein
LOC_Os11g34870OsAffx.19160.1.A1_at5/1111+19932099..19935754expressed protein
LOC_Os11g34880Os.54278.1.S1_x_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34880OsAffx.19161.1.S1_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34890OsAffx.31300.1.S1_at11/1111+19951723..19952303hypothetical protein
LOC_Os11g34900OsAffx.19162.1.S1_at11/1111+19953150..19953499hypothetical protein
LOC_Os11g34910Os.10263.1.S1_at11/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.45902.1.A1_x_at4/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.56372.1.S1_at1/1111+19954062..19959051expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0000035molecular_functionacyl binding
GO:0005515molecular_functionprotein binding
GO:0016417molecular_functionS-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16466.1.S1_at--909--5731Chr11:19930429..19930453 (25 bp)
GACGGACGCTTCAGGAATCCTTACA
LOC_Os11g34860
Os.16466.1.S1_at--204--3031Chr11:19930444..19930468 (25 bp)
AATCCTTACAGTCGAGGATGCCGGA
LOC_Os11g34860
Os.16466.1.S1_at--830--6351Chr11:19930460..19930484 (25 bp)
GATGCCGGAGGAACTGCGCTGATTT
LOC_Os11g34860
Os.16466.1.S1_at--648--8171Chr11:19930469..19930493 (25 bp)
GGAACTGCGCTGATTTTCTTGTAAA
LOC_Os11g34860
Os.16466.1.S1_at--35--891Chr11:19930521..19930545 (25 bp)
ATGGCCAACGCTTCAACAAACAGTG
LOC_Os11g34860
Os.16466.1.S1_at--435--311Chr11:19930577..19930601 (25 bp)
ATACCAGTCTTATACAGTCACACAG
LOC_Os11g34860
Os.16466.1.S1_at--1029--1152Chr11:19930592..19930616 (25 bp)
AGTCACACAGTTCATAAGATCCAGG
LOC_Os11g34860
Os.16466.1.S1_at--936--2471Chr11:19930656..19930680 (25 bp)
AACAGGTGCGGAAAGCGATCTCCCC
LOC_Os11g34860
Os.16466.1.S1_at--885--9531Chr11:19930775..19930799 (25 bp)
TCTTTTTTGGCGGTTACATCACTAT
LOC_Os11g34860
Os.16466.1.S1_at--883--91Chr11:19930820..19930844 (25 bp)
ATTCGATTTCGAGTGCCAATAGATG
LOC_Os11g34860
Os.16466.1.S1_at--132--1291Chr11:19930890..19930914 (25 bp)
AGATGCTTTCGTGCAAGTAGACAAA
LOC_Os11g34860
Target Sequence 
GACGGACGCTTCAGGAATCCTTACAGTCGAGGATGCCGGAGGAACTGCGCTGATTTTCTTGTAAATGGATACAGTAATGA
CGAGGAGGCTGCATGGCCAACGCTTCAACAAACAGTGCAACGAAGCTAGTCNNACAAATTTCTGGAGCAAATACCAGTCT
TATACAGTCACACAGTTCATAAGATCCAGGAGAGAAGGTTTGAACAATTTTCTGACTTGGATGGACAACAACAGGTGCGG
AAAGCGATCTCCCCTTTGAGCCACTCTGCTTCATCNAGGTGTTTATACAAGGTTGAGTCATGGGAATGGTTTGATTTTGT
AGATTATGTGTATGTGCTATATATGTATTCTTTTTTGGCGGTTACATCACTATTACCATACATATCGTGTTGTNNNATTC
GATTTCGAGTGCCAATAGATGAGAAATGCAGGTTTGAACTTCTGATGTATAATAATCTGTAACATTAGATGCTTTCGTGC
AAGTAGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis