Browse Element(s) Details


Os.9098.1.S1_at

Description gb:AK121354.1
DB_XREF= gi:37990977
TID=Os.9098.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122F17, full insert sequence.
FL= gb:AK121354.1 gb:AK067699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3482011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34760NANA11+19868161..19870914expressed protein
LOC_Os11g34770Os.27616.1.S1_at1/1111+19871478..19874813Maf-like protein, expressed
LOC_Os11g34780NANA11+19876545..19876940hypothetical protein
LOC_Os11g34790Os.12149.1.S1_at11/1111+19880616..19884240expressed protein
LOC_Os11g34800Os.50388.1.S1_at11/1111+19884987..19887686expressed protein
LOC_Os11g34800OsAffx.12918.1.S1_s_at11/1111+19884987..19887686expressed protein
LOC_Os11g34810Os.10981.1.S1_at10/1111+19888990..19890956expressed protein
LOC_Os11g34820Os.9098.1.S1_at11/1111+19895836..19904170Zinc knuckle family protein, expressed
LOC_Os11g34830NANA11+19906539..19913611ABC1 family protein
LOC_Os11g34840NANA11+19915274..19917823expressed protein
LOC_Os11g34850Os.27616.1.S1_at10/1111+19918770..19922297Maf family protein, putative, expressed
LOC_Os11g34860Os.16466.1.S1_at11/1111+19924659..19930996ankryin repeat S-palmitoyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9098.1.S1_at--968--7871Chr11:19898310..19898334 (25 bp)
GGTTGACCTTAACAGTCCAAACAGG
LOC_Os11g34820
Os.9098.1.S1_at--555--2131Chr11:19900048..19900072 (25 bp)
ACAGTGCTCGCAAAGTTCAATCTAA
LOC_Os11g34820
Os.9098.1.S1_at--1008--5031Chr11:19900092..19900116 (25 bp)
GCAGAAGCAGCTAATGGGCCAACTT
LOC_Os11g34820
Os.9098.1.S1_at--327--6651Chr11:19900146..19900170 (25 bp)
GTTGAGCCGTGGCAGTCACTGTTAA
LOC_Os11g34820
Os.9098.1.S1_at--899--1271Chr11:19900172..19900196 (25 bp)
AGATCAAATGTACTCGTATCCATCG
LOC_Os11g34820
Os.9098.1.S1_at--341--6911Chr11:19900187..19900211 (25 bp)
GTATCCATCGAAGGCCGCGACAGTT
LOC_Os11g34820
Os.9098.1.S1_at--938--8411Chr11:19900199..19900223 (25 bp)
GGCCGCGACAGTTGTAAAGCACCCT
LOC_Os11g34820
Os.9098.1.S1_at--639--2251Chr11:19900225..19900249 (25 bp)
AAATATTTTGATGTTGTGCCGCCAA
LOC_Os11g34820
Os.9098.1.S1_at--1070--10771Chr11:19900449..19900473 (25 bp)
TTGATGCCTGGCGTGTGCGTGTCCA
LOC_Os11g34820
Os.9098.1.S1_at--133--9151Chr11:19900464..19900488 (25 bp)
TGCGTGTCCATGTGCTCACTGGCAT
LOC_Os11g34820
Os.9098.1.S1_at--752--4831Chr11:19900477..19900501 (25 bp)
GCTCACTGGCATTTTGATTCATTCA
LOC_Os11g34820
Target Sequence 
GGTTGACCTTAACAGTCCAAACAGGATTATTATTGTGCAGATTGAGAAGATTATATGTATGGTTGGAGTGATCGAGAGGT
ACACAGTGCTCGCAAAGTTCAATCTAAAGCAGCTGACCTCACCACCGCAGAAGCAGCTAATGGGCCAACTTGAATTAGAT
TCGGCAGCAGTTAGTTGTTGGTTGAGCCGTGGCAGTCACTGTTAAAAGATCAAATGTACTCGTATCCATCGAAGGCCGCG
ACAGTTGTAAAGCACCCTGAAATATTTTGATGTTGTGCCGCCAAACTGGCTTCCACGGGGACTACAAATCGATCTAAATC
TGCCAATTAAATCTATATTCATTCAGCAAAAGCAGTTAAACTATGAAGCCTAAAAAGAGAGTTTATTACTGTTGTTATTT
TTTCTTTTTTCTTCGAAGACAAAAAGAGAGACATTCATGGATGTTACGCNCAACTGAGATGAAACCTGTGATGTCTGTTT
TCATTGATGCCTGGCGTGTGCGTGTCCATGTGCTCACTGGCATTTTGATTCATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis