Browse Element(s) Details


Os.12149.1.S1_at

Description gb:AK101587.1
DB_XREF= gi:32986796
TID=Os.12149.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12149 (NCBI UniGene Cluster)
UG_TITLE=Clone Osl136 unknown protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051A04, full insert sequence.
FL= gb:AK106162.1 gb:AK061644.1 gb:AK072644.1 gb:AK101587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3479011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34750NANA11+19858647..19867617ABC1 family protein
LOC_Os11g34760NANA11+19868161..19870914expressed protein
LOC_Os11g34770Os.27616.1.S1_at1/1111+19871478..19874813Maf-like protein, expressed
LOC_Os11g34780NANA11+19876545..19876940hypothetical protein
LOC_Os11g34790Os.12149.1.S1_at11/1111+19880616..19884240expressed protein
LOC_Os11g34800Os.50388.1.S1_at11/1111+19884987..19887686expressed protein
LOC_Os11g34800OsAffx.12918.1.S1_s_at11/1111+19884987..19887686expressed protein
LOC_Os11g34810Os.10981.1.S1_at10/1111+19888990..19890956expressed protein
LOC_Os11g34820Os.9098.1.S1_at11/1111+19895836..19904170Zinc knuckle family protein, expressed
LOC_Os11g34830NANA11+19906539..19913611ABC1 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12149.1.S1_at--774--9231Chr11:19882131..19882155 (25 bp)
TCCATCATATCTTTACTTGCTGCAA
LOC_Os11g34790
Os.12149.1.S1_at--374--3631Chr11:19883789..19883813 (25 bp)
CTTGATGGGCTCTTGTTTCCGCTGA
LOC_Os11g34790
Os.12149.1.S1_at--205--1031Chr11:19883813..19883837 (25 bp)
AGGTCTTTTCCTCCAGAATATCTAG
LOC_Os11g34790
Os.12149.1.S1_at--507--4051Chr11:19883923..19883947 (25 bp)
CGATGCCGCCGAACAGAGTCGATGT
LOC_Os11g34790
Os.12149.1.S1_at--115--6271Chr11:19883943..19883967 (25 bp)
GATGTGTTCTCTATTGAAAGTCCCT
LOC_Os11g34790
Os.12149.1.S1_at--258--5571Chr11:19883958..19883982 (25 bp)
GAAAGTCCCTGGATCAATCGTCCAA
LOC_Os11g34790
Os.12149.1.S1_at--923--1091Chr11:19883985..19884009 (25 bp)
AGTGTATGGACCTTTGATGCCTTCT
LOC_Os11g34790
Os.12149.1.S1_at--785--591Chr11:19884001..19884025 (25 bp)
ATGCCTTCTTCCCTGGATTAATCGT
LOC_Os11g34790
Os.12149.1.S1_at--1093--1111Chr11:19884032..19884056 (25 bp)
AGTGCATGGACCTTTGATGCCTTCT
LOC_Os11g34790
Os.12149.1.S1_at--537--8751Chr11:19884064..19884088 (25 bp)
TGTTTGACGGACCTTTGTTGCCCCA
LOC_Os11g34790
Os.12149.1.S1_at--1141--6671Chr11:19884080..19884104 (25 bp)
GTTGCCCCATCTTTAACAGTATGCT
LOC_Os11g34790
Target Sequence 
TCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGG
TTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGG
AGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGC
AGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTG
ATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTG
TTGCCCCATCTTTAACAGTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis