Browse Element(s) Details


Os.27634.1.S1_at

Description gb:AK068874.1
DB_XREF= gi:32978899
TID=Os.27634.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) SIG6 mRNA for Sig6, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170C15, full insert sequence.
FL= gb:AK068874.1 gb:AK099922.1 gb:AB096012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1445011/11Sigma-70 region 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14420NANA8+8647643..8647846hypothetical protein
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein
LOC_Os08g14440Os.5613.2.S1_x_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14440Os.5613.1.S1_s_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14450Os.27634.1.S1_at11/118+8671612..8675214Sigma-70 region 2 family protein, expressed
LOC_Os08g14460Os.47334.1.S1_at11/118+8675237..8680095expressed protein
LOC_Os08g14470NANA8+8683308..8689463transposon protein, putative, unclassified
LOC_Os08g14480NANA8+8690093..8693327transposon protein, putative, unclassified
LOC_Os08g14490Os.49256.1.S1_at11/118+8697456..87025984'-phosphopantetheinyl transferase superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0019685biological_processphotosynthesis, dark reaction
GO:0045941biological_processpositive regulation of transcription
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0016987molecular_functionsigma factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27634.1.S1_at--1064--1271Chr08:8674576..8674600 (25 bp)
AGATCATCGAGCACCGGTTCGGGAT
LOC_Os08g14450
Os.27634.1.S1_at--613--9431Chr08:8674594..8674618 (25 bp)
TCGGGATCCACGATGGCGAGCCGAA
LOC_Os08g14450
Os.27634.1.S1_at--348--4611Chr08:8674609..8674633 (25 bp)
GCGAGCCGAAGACGCTACATGTCAT
LOC_Os08g14450
Os.27634.1.S1_at--613--9631Chr08:8674666..8674690 (25 bp)
TCAGGCAGCTGCAGAACCGGGCGCT
LOC_Os08g14450
Os.27634.1.S1_at--738--2191Chr08:8674831..8674855 (25 bp)
ACACACTGTAGCTTTCTAGACCTAT
LOC_Os08g14450
Os.27634.1.S1_at--52--251Chr08:8674863..8674887 (25 bp)
ATATACTACACACCCAGTGACACGT
LOC_Os08g14450
Os.27634.1.S1_at--752--791Chr08:8674923..8674947 (25 bp)
ATGTGGTACACGGATTCAGAGTTTC
LOC_Os08g14450
Os.27634.1.S1_at--624--10511Chr08:8674937..8674961 (25 bp)
TTCAGAGTTTCAGATGGCATCCTTT
LOC_Os08g14450
Os.27634.1.S1_at--777--4771Chr08:8674991..8675015 (25 bp)
GCTGCTGTTGGTGCTTATACTGATA
LOC_Os08g14450
Os.27634.1.S1_at--1060--3111Chr08:8675084..8675108 (25 bp)
AATTTGAGCTGATCAGGCGCTGTAA
LOC_Os08g14450
Os.27634.1.S1_at--933--2111Chr08:8675119..8675143 (25 bp)
ACAGGTCCTGGATACATACTTGTAG
LOC_Os08g14450
Target Sequence 
AGATCATCGAGCACCGGTTCGGGATCCACGATGGCGAGCCGAAGACGCTACATGTCATCGGGGACATGTTTGGGCTGTCC
AAGGAGAGGATCAGGCAGCTGCAGAACCGGGCGCTGGAGAAGCTCAAGAGGAGTGCATCCTTGCAGGGGTTTGATGTCTA
CTTTGATTTGCTAACCTGAAGAAGAAAGGCCAAGCAGCTCATTTGGTTTCAGAAACTTTCAGTCAAGTTGTCCATACAAA
ACAGCAGAAACACATACACACTGTAGCTTTCTAGACCTATTATACATATATACTACACACCCAGTGACACGTACTGTACA
AGTATAGTGCTAGATCTGCAGAAAGAAATGTGGTACACGGATTCAGAGTTTCAGATGGCATCCTTTTTTGCTTATGTAAG
TAAATTTCCCAGCAAGCTGCTGTTGGTGCTTATACTGATACTGCAAGTCTGCAATGCAAAGCAACCCTCATTGTAATTAA
GGATAATCATGTACATTTTTTTACCCTTAATTTGAGCTGATCAGGCGCTGTAATTATAACGGAACAGGTCCTGGATACAT
ACTTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis