Browse Element(s) Details


OsAffx.5815.1.S1_at

Description tigr:9636.m01442
TID=OsAffx.5815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1443010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14390OsAffx.16993.1.S1_at11/118+8624616..8630059expressed protein
LOC_Os08g14400Os.55010.1.S1_at10/118+8632850..8634403Homeobox domain containing protein, expressed
LOC_Os08g14410OsAffx.16994.1.S1_at11/118+8639813..8640190hypothetical protein
LOC_Os08g14420NANA8+8647643..8647846hypothetical protein
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein
LOC_Os08g14440Os.5613.2.S1_x_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14440Os.5613.1.S1_s_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14450Os.27634.1.S1_at11/118+8671612..8675214Sigma-70 region 2 family protein, expressed
LOC_Os08g14460Os.47334.1.S1_at11/118+8675237..8680095expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5815.1.S1_at--788--1731Chr08:8649907..8649931 (25 bp)
ACCTTGATGGCACCCGCTGAACCAA
LOC_Os08g14430
OsAffx.5815.1.S1_at--1059--5411Chr08:8649925..8649949 (25 bp)
GAACCAAGCGGATGTCAGCAACCTC
LOC_Os08g14430
OsAffx.5815.1.S1_at--547--851Chr08:8649963..8649987 (25 bp)
ATGGCCAATTAACATGGCGGCGGCA
LOC_Os08g14430
OsAffx.5815.1.S1_at--42--3571Chr08:8649986..8650010 (25 bp)
CATCAGGCATGCATGGCGGGAAAGC
LOC_Os08g14430
OsAffx.5815.1.S1_at--1128--5551Chr08:8650005..8650029 (25 bp)
GAAAGCCGCTGCGAACTCCGGCAAG
LOC_Os08g14430
OsAffx.5815.1.S1_at--530--571Chr08:8650033..8650057 (25 bp)
ATCCTAGTGACGATACTGACGCGCC
LOC_Os08g14430
OsAffx.5815.1.S1_at--301--5792Chr08:8650050..8650074 (25 bp)
GACGCGCCGCCTGTCGAAATTAGCA
LOC_Os08g14430
OsAffx.5815.1.S1_at--317--10451NONE
TTAGCAACCGATCTGAGCGGGCCGA
NONE
OsAffx.5815.1.S1_at--1100--7211Chr08:8650687..8650711 (25 bp)
GTCGAAGTGGAGATCCCTGGCATCA
LOC_Os08g14430
OsAffx.5815.1.S1_at--1135--8491Chr08:8650704..8650728 (25 bp)
TGGCATCACCGCTGGTCGAGAAATC
LOC_Os08g14430
OsAffx.5815.1.S1_at--308--6031Chr08:8650730..8650754 (25 bp)
GAGAGGAATGGTAGCCCGAGCACAC
LOC_Os08g14430
Target Sequence 
ACCTTGATGGCACCCGCTGAACCAAGCGGATGTCAGCAACCTCCTCCTCCCGTCGCATGGCCAATTAACATGGCGGCGGC
ATCAGGCATGCATGGCGGGAAAGCCGCTGCGAACTCCGGCAAGACCATCCTAGTGACGATACTGACGCGCCGCCTGTCGA
AATTAGCAACCGATCTGAGCGGGCCGAGCCCGATGTGGACGGAAAAGGTGAAGGGATGGAGCAAGTCATTGGGGCAGTAC
AAGAGACGGAGGGTCGGGCCGGAGGAAAATGAGGTGGAGTGGTCGAAGTGGAGATCCCTGGCATCACCGCTGGTCGAGAA
ATCGGAGAGGAATGGTAGCCCGAGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis