Browse Element(s) Details


Os.55010.1.S1_at

Description gb:AK107305.1
DB_XREF= gi:32992514
TID=Os.55010.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D01, full insert sequence.
FL= gb:AK107305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1440010/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14360OsAffx.5813.1.S1_x_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.55633.1.A1_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.8093.2.S1_x_at1/118+8607417..8609356expressed protein
LOC_Os08g14364Os.54755.1.S1_at9/118+8609377..8611503expressed protein
LOC_Os08g14370NANA8+8617303..8618016hypothetical protein
LOC_Os08g14380NANA8+8619306..8619608hypothetical protein
LOC_Os08g14390OsAffx.16993.1.S1_at11/118+8624616..8630059expressed protein
LOC_Os08g14400Os.55010.1.S1_at10/118+8632850..8634403Homeobox domain containing protein, expressed
LOC_Os08g14410OsAffx.16994.1.S1_at11/118+8639813..8640190hypothetical protein
LOC_Os08g14420NANA8+8647643..8647846hypothetical protein
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0010075biological_processregulation of meristem size
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55010.1.S1_at--998--131Chr08:8633610..8633634 (25 bp)
ATTACAGCAGCTACGCGGACAGCGA
LOC_Os08g14400
Os.55010.1.S1_at--372--9651Chr08:8633393..8633598 (25 bp)
TCAGCTACCAACCAACCGGGACGAT
LOC_Os08g14400
Os.55010.1.S1_at--469--4251NONE
CCGGGACGATCCAAGTGTTCATCAA
NONE
Os.55010.1.S1_at--1066--2951Chr08:8633355..8633379 (25 bp)
AATGGCGTCGCATACGATGTGCCGA
LOC_Os08g14400
Os.55010.1.S1_at--902--4651Chr08:8633240..8633264 (25 bp)
GCGTGCTCATCAACAGCTTGCAGAT
LOC_Os08g14400
Os.55010.1.S1_at--220--7651Chr08:8633073..8633237 (25 bp)
GGGAGTGCTACTACCTGGTTTCAAA
LOC_Os08g14400
Os.55010.1.S1_at--588--9131Chr08:8632978..8633002 (25 bp)
TGCGGGATTTGCTTCATTGATTAAT
LOC_Os08g14400
Os.55010.1.S1_at--420--6051Chr08:8632950..8632974 (25 bp)
GAGATTGATTCCCAGCTCCATGAAT
LOC_Os08g14400
Os.55010.1.S1_at--1123--7911Chr08:8632913..8632937 (25 bp)
GGTTGTCCAGGGATCATATCAGTGT
LOC_Os08g14400
Os.55010.1.S1_at--1119--2971Chr08:8632883..8632907 (25 bp)
AATGTGGTTGATTTCTCTCCATCGA
LOC_Os08g14400
Os.55010.1.S1_at--144--171Chr08:8632853..8632877 (25 bp)
ATTATTATCTCGATGCATCGTCCCC
LOC_Os08g14400
Target Sequence 
ATTACAGCAGCTACGCGGACAGCGACGCCACCCAGCTCAGCTACCAACCAACCGGGACGATCCAAGTGTTCATCAATGGC
GTCGCATACGATGTGCCGAGCGGCGGAGCGCTGGACATGGCCGGCACGTTTGGCCGCGACGCCATGCTGGTGCACTCCTC
CGGCGAGGTCCTTCCGGTGGACGAGCACGGCGTGCTCATCAACAGCTTGCAGATGGGGGAGTGCTACTACCTGGTTTCAA
AATCGATCTGATTAATCGGATGGATGAAGGTGGAGAAGAAGATGCAAGATTTATGTATGCTCTTGTAAGCATGCGGGATT
TGCTTCATTGATTAATTGGGAGATTGATTCCCAGCTCCATGAATTGTTGTTAATTAGGTTGTCCAGGGATCATATCAGTG
TGTACTAATGTGGTTGATTTCTCTCCATCGATGTATATTATTATCTCGATGCATCGTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis