Browse Element(s) Details


OsAffx.16994.1.S1_at

Description tigr:9636.m01440
TID=OsAffx.16994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1441011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14370NANA8+8617303..8618016hypothetical protein
LOC_Os08g14380NANA8+8619306..8619608hypothetical protein
LOC_Os08g14390OsAffx.16993.1.S1_at11/118+8624616..8630059expressed protein
LOC_Os08g14400Os.55010.1.S1_at10/118+8632850..8634403Homeobox domain containing protein, expressed
LOC_Os08g14410OsAffx.16994.1.S1_at11/118+8639813..8640190hypothetical protein
LOC_Os08g14420NANA8+8647643..8647846hypothetical protein
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein
LOC_Os08g14440Os.5613.2.S1_x_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14440Os.5613.1.S1_s_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16994.1.S1_at--264--7111Chr08:8639848..8639872 (25 bp)
GTCACCTCTGTTGTCACCATTGCTG
LOC_Os08g14410
OsAffx.16994.1.S1_at--905--9171Chr08:8639877..8639901 (25 bp)
TGCCTCCTTCCCATTGTCATATGGC
LOC_Os08g14410
OsAffx.16994.1.S1_at--854--3571Chr08:8639894..8639918 (25 bp)
CATATGGCATTTGTCTGCGACGGCC
LOC_Os08g14410
OsAffx.16994.1.S1_at--892--5731Chr08:8639912..8639936 (25 bp)
GACGGCCACATCTACGAGCACTGTA
LOC_Os08g14410
OsAffx.16994.1.S1_at--887--911Chr08:8639936..8639960 (25 bp)
AGGCATCTGAGCTACAACATTCTTA
LOC_Os08g14410
OsAffx.16994.1.S1_at--356--2511Chr08:8639951..8639975 (25 bp)
AACATTCTTACATCTTCACTTGGGC
LOC_Os08g14410
OsAffx.16994.1.S1_at--985--2051Chr08:8639968..8639992 (25 bp)
ACTTGGGCCAGGTAGATCCACTGAC
LOC_Os08g14410
OsAffx.16994.1.S1_at--618--6151Chr08:8640002..8640026 (25 bp)
GAGGTCGGCACTAGATCCGGTGTCC
LOC_Os08g14410
OsAffx.16994.1.S1_at--98--8431Chr08:8640029..8640053 (25 bp)
GGCCTCCTCGTTGTCAGATGCAACG
LOC_Os08g14410
OsAffx.16994.1.S1_at--513--971Chr08:8640091..8640115 (25 bp)
AGGAGAATCACGTGCTCGCAGCTTG
LOC_Os08g14410
OsAffx.16994.1.S1_at--262--2871Chr08:8640130..8640154 (25 bp)
AAGGGCCAGGGAATCGCGTGACCAA
LOC_Os08g14410
Target Sequence 
GTCACCTCTGTTGTCACCATTGCTGCTCCTGCCTCCTTCCCATTGTCATATGGCATTTGTCTGCGACGGCCACATCTACG
AGCACTGTAGGCATCTGAGCTACAACATTCTTACATCTTCACTTGGGCCAGGTAGATCCACTGACATGGAAGACGAGGTC
GGCACTAGATCCGGTGTCCCTGGCCTCCTCGTTGTCAGATGCAACGGCGGCGGCATATTGGCTAGAGTAGGAGAAGGGAG
AGGAGGAGAATCACGTGCTCGCAGCTTGGTGGAGGAGAGGGGAAGGGCCAGGGAATCGCGTGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis