Browse Element(s) Details


OsAffx.16993.1.S1_at

Description tigr:9636.m01438
TID=OsAffx.16993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1439011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14360OsAffx.5813.1.S1_x_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.55633.1.A1_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.8093.2.S1_x_at1/118+8607417..8609356expressed protein
LOC_Os08g14364Os.54755.1.S1_at9/118+8609377..8611503expressed protein
LOC_Os08g14370NANA8+8617303..8618016hypothetical protein
LOC_Os08g14380NANA8+8619306..8619608hypothetical protein
LOC_Os08g14390OsAffx.16993.1.S1_at11/118+8624616..8630059expressed protein
LOC_Os08g14400Os.55010.1.S1_at10/118+8632850..8634403Homeobox domain containing protein, expressed
LOC_Os08g14410OsAffx.16994.1.S1_at11/118+8639813..8640190hypothetical protein
LOC_Os08g14420NANA8+8647643..8647846hypothetical protein
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16993.1.S1_at--616--6151Chr08:8626911..8626935 (25 bp)
GAGGTTATCACGGATCCTTTTACCG
LOC_Os08g14390
OsAffx.16993.1.S1_at--672--4191Chr08:8627196..8627216 (21 bp)
CCCGAGTCTGTAGCGGCTTGGAGCA
LOC_Os08g14390
OsAffx.16993.1.S1_at--636--8451Chr08:8629839..8629863 (25 bp)
TGGCCATGCAGTCCTACTCCATGAT
LOC_Os08g14390
OsAffx.16993.1.S1_at--1064--1351Chr08:8629866..8629890 (25 bp)
AGAGCAATGGCGTGATCCCACTTGA
LOC_Os08g14390
OsAffx.16993.1.S1_at--261--8851Chr08:8629878..8629902 (25 bp)
TGATCCCACTTGACAATGCGCTGTT
LOC_Os08g14390
OsAffx.16993.1.S1_at--1081--3011Chr08:8629892..8629916 (25 bp)
AATGCGCTGTTCAAGACGCTCCCTC
LOC_Os08g14390
OsAffx.16993.1.S1_at--352--9311Chr08:8629911..8629935 (25 bp)
TCCCTCCGTCGTTGGAGATGGTTGA
LOC_Os08g14390
OsAffx.16993.1.S1_at--718--1311Chr08:8629926..8629950 (25 bp)
AGATGGTTGACTTGCACACGCTGGC
LOC_Os08g14390
OsAffx.16993.1.S1_at--458--9911Chr08:8629953..8629977 (25 bp)
TACTCCACTACACCAACATGTTTGA
LOC_Os08g14390
OsAffx.16993.1.S1_at--904--4371Chr08:8629965..8629989 (25 bp)
CCAACATGTTTGACGTGGTGCACGT
LOC_Os08g14390
OsAffx.16993.1.S1_at--149--2751Chr08:8629997..8630021 (25 bp)
AAGAACCTCTACGTGAGCGGTGACC
LOC_Os08g14390
Target Sequence 
GAGGTTATCACGGATCCTTTTACCGTACCCCCGCGGCCAAACACGCCGCCGTCCCGAGTCTGTAGCGGCTTGGAGCAGCG
GTGTCGGCGGCAGGTCGGGGTGGTTCCGGAGATCCGTACGTCGGCGTCGGACCTAGCCCAGTTCCTCCGCGCGCATCGCA
TCAGCCACGTGTGCCTCCGTGCCATCATTGGCGTCCCCAACTACAAGCTCCTCGCCCTGGGCTCCTCCCTGGCAACCGCC
TCCGCCTGGGTCGCCCGCCACGTCTTACCCTATGCCGGCGCCAACTCCAGCACCCCGGCCCATCACCGCCATCGCCGTCG
GCGACGAGGTCCCCACCGCTCTCCCCTCCGCGCTCCCCATGCTCCTCCTGGGCTCCTGGCCATGCAGTCCTACTCCATGA
TGCAGAGCAATGGCGTGATCCCACTTGACAATGCGCTGTTCAAGACGCTCCCTCCGTCGTTGGAGATGGTTGACTTGCAC
ACGCTGGCGCTACTCCACTACACCAACATGTTTGACGTGGTGCACGTCGCCGTGAAGAACCTCTACGTGAGCGGTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis