Browse Element(s) Details


Os.54755.1.S1_at

Description gb:AK106690.1
DB_XREF= gi:32991899
TID=Os.54755.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C06, full insert sequence.
FL= gb:AK106690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g143649/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14330Os.39978.1.S1_at11/118+8582702..8588027Possible apospory-associated protein C, putative, expressed
LOC_Os08g14340NANA8+8591905..8596146retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14350OsAffx.29196.1.S1_at11/118+8598664..8599374hypothetical protein
LOC_Os08g14360OsAffx.5813.1.S1_x_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.55633.1.A1_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.8093.2.S1_x_at1/118+8607417..8609356expressed protein
LOC_Os08g14364Os.54755.1.S1_at9/118+8609377..8611503expressed protein
LOC_Os08g14370NANA8+8617303..8618016hypothetical protein
LOC_Os08g14380NANA8+8619306..8619608hypothetical protein
LOC_Os08g14390OsAffx.16993.1.S1_at11/118+8624616..8630059expressed protein
LOC_Os08g14400Os.55010.1.S1_at10/118+8632850..8634403Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54755.1.S1_at--349--3351Chr08:8610972..8610996 (25 bp)
CACGTCGACCCGGAGTAGACGCAGT
LOC_Os08g14364
Os.54755.1.S1_at--254--1551Chr08:8611104..8611128 (25 bp)
AGCTTGACGTTGATGACGTCGCCGG
LOC_Os08g14364
Os.54755.1.S1_at--1006--4031Chr08:8611228..8611252 (25 bp)
CGTTGCTCTCCTCCCAGTAGGATAT
LOC_Os08g14364
Os.54755.1.S1_at--1043--6051Chr08:8611257..8611281 (25 bp)
GAGTTGATCAACAGCAGCGCGATGA
LOC_Os08g14364
Os.54755.1.S1_at--634--1511Chr08:8611269..8611293 (25 bp)
AGCAGCGCGATGATCCCGACGAAGT
LOC_Os08g14364
Os.54755.1.S1_at--431--712Chr08:8611278..8611302 (25 bp)
ATGATCCCGACGAAGTCCTGCCAGT
LOC_Os08g14364
Os.54755.1.S1_at--38--5451NONE
GAACCCCAGAGACTTCAGTATCTTG
NONE
Os.54755.1.S1_at--302--1411NONE
AGACTTCAGTATCTTGCTCTCCTGT
NONE
Os.54755.1.S1_at--737--3791Chr08:8611412..8611436 (25 bp)
CTCCTGTGCTCATCGTCAAAATCAA
LOC_Os08g14364
Os.54755.1.S1_at--402--9711Chr08:8611449..8611473 (25 bp)
TCAAAATCATGTTACACCACCACTC
LOC_Os08g14364
Os.54755.1.S1_at--561--1711Chr08:8611464..8611488 (25 bp)
ACCACCACTCCAAAGATCAATCGAT
LOC_Os08g14364
Target Sequence 
CACGTCGACCCGGAGTAGACGCAGTCGCCGGGGAGCTTGGTGACCGGCAGGGACTCGCCGGTGAGCGCCGACTGGTCGAT
CTTGAGGGGATCGCCGTCGAGGAGGCGGGCGTCAGCGGGGACGATGTCGCCGAGCTTGACGTTGATGACGTCGCCGGGGA
CGAGGACGAAGGCGTCGGTCTCCGACCACCTGCCGTCGCGGAGCACCTTGGTCTTGGGGGCGAGGTTCTTCATGAGCGCC
GCCGCGGCGCTGCCGGCGTTGCTCTCCTCCCAGTAGGATATGGTGGAGTTGATCAACAGCAGCGCGATGATCCCGACGAA
GTCCTGCCAGTCCGGCGGCCGCCCGCCGCCGTTCGCCAGCGCGATCGCCATGATCGCCGCCACCTCCATCACCCACGACA
GCGGGTTCCACATGAACCCCAGAGACTTCAGTATCTTGCTCTCCTGTGCTCATCGTCAAAATCAAAATCAAATCAAATCA
AAATCATGTTACACCACCACTCCAAAGATCAATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis