Browse Element(s) Details


OsAffx.29196.1.S1_at

Description tigr:9636.m01432
TID=OsAffx.29196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1435011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14320OsAffx.29194.1.S1_at11/118+8575718..8577527Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g14330Os.39978.1.S1_at11/118+8582702..8588027Possible apospory-associated protein C, putative, expressed
LOC_Os08g14340NANA8+8591905..8596146retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14350OsAffx.29196.1.S1_at11/118+8598664..8599374hypothetical protein
LOC_Os08g14360OsAffx.5813.1.S1_x_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.55633.1.A1_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.8093.2.S1_x_at1/118+8607417..8609356expressed protein
LOC_Os08g14364Os.54755.1.S1_at9/118+8609377..8611503expressed protein
LOC_Os08g14370NANA8+8617303..8618016hypothetical protein
LOC_Os08g14380NANA8+8619306..8619608hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29196.1.S1_at--714--9174Chr05:5164740..5164764 (25 bp)
TGCCGCTGCAAGAACAACCGGCGGC
NONE
OsAffx.29196.1.S1_at--343--91Chr08:8599201..8599225 (25 bp)
ATTCGTGTCCCCCAACCTCGTGGAG
LOC_Os08g14350
OsAffx.29196.1.S1_at--349--7512Chr04:8124022..8124046 (25 bp)
GTGGAGGCTAGATCCGACACCCAGC
NONE
OsAffx.29196.1.S1_at--309--6212Chr04:8124025..8124049 (25 bp)
GAGGCTAGATCCGACACCCAGCAGT
NONE
OsAffx.29196.1.S1_at--164--3712Chr04:8124029..8124053 (25 bp)
CTAGATCCGACACCCAGCAGTCGGG
NONE
OsAffx.29196.1.S1_at--842--6153Chr05:5164914..5164938 (25 bp)
GAGGCTACCCGGATCTGGCGTGGTG
NONE
OsAffx.29196.1.S1_at--456--8593Chr05:5165087..5165111 (25 bp)
TGGTCCCCGCCGATGGACGATGGAC
NONE
OsAffx.29196.1.S1_at--179--2191Chr08:8598843..8598867 (25 bp)
ACAAGCCCCAAGAGCCGGAGAGGGC
LOC_Os08g14350
OsAffx.29196.1.S1_at--2--2793Chr05:5165162..5165186 (25 bp)
AAGAGGCGGACGTCGGTCACCACGA
NONE
OsAffx.29196.1.S1_at--771--9293Chr05:5165221..5165245 (25 bp)
TCCGCCTCCGACACAGGTCGATGAA
NONE
OsAffx.29196.1.S1_at--123--4113Chr05:5165229..5165251 (23 bp)
CGACACAGGTCGATGAAGAGAGAAA
NONE
Target Sequence 
TGCCGCTGCAAGAACAACCGGCGGCGGCGGGCGGGCGGATTCGTGTCCCCCAACCTCGTGGAGGCTAGATCCGACACCCA
GCAGTCGGGGGACGGCGGCCGTGGCGCCCGGCGGTCGGGGAGGGGGGCGAAGGAGGCGGCGACCTGGATCTGGCGTGGTG
GAGGCAGGAAGGAGGAGGCTACCCGGATCTGGCGTGGTGCAGGCGGGAAGGAGGCGGCGACCCGGAGGCGGTGGGCGAAG
GAGCTGACGACGGGGCGGCGGAGAGACGGCGGCGGCGACCATGAGGCTGAGGGCGAAGGAGGCGGCGACCTTCGGAGGTG
GGCGAAGGAGGCCGCCGCCTCCGCCTCTGGTCCCCGCCGATGGACGATGGACGGCGCCGCGCCGCTGCTCCCCGAGACAA
GCCCCAAGAGCCGGAGAGGGCGAAGAGGCGGACGTCGGTCACCACGACGCGGCCCCCGCACCCGCCGGCGCCGGTGCCGT
CTCCGCCTCCGACACAGGTCGATGAAGAGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis