Browse Element(s) Details


OsAffx.29194.1.S1_at

Description tigr:9636.m01426
TID=OsAffx.29194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1432011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14280Os.40855.2.S1_x_at10/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.45796.1.S1_at6/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.40855.4.S1_x_at3/118+8550632..8552119hypothetical protein
LOC_Os08g14280OsAffx.14669.1.S1_at1/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.40360.1.S1_x_at1/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.40855.4.S1_at1/118+8550632..8552119hypothetical protein
LOC_Os08g14290NANA8+8554317..8558120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g14300OsAffx.16991.1.S1_at1/118+8558685..8559002hypothetical protein
LOC_Os08g14310NANA8+8564560..8568309hypothetical protein
LOC_Os08g14320OsAffx.29194.1.S1_at11/118+8575718..8577527Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g14330Os.39978.1.S1_at11/118+8582702..8588027Possible apospory-associated protein C, putative, expressed
LOC_Os08g14340NANA8+8591905..8596146retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14350OsAffx.29196.1.S1_at11/118+8598664..8599374hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29194.1.S1_at--430--6531Chr08:8576276..8576300 (25 bp)
GATTTGCAAGGACCTACCGGTAGGT
LOC_Os08g14320
OsAffx.29194.1.S1_at--1120--671Chr08:8576376..8576400 (25 bp)
ATGACTCCACTGAATACTGGCGCTT
LOC_Os08g14320
OsAffx.29194.1.S1_at--942--3091Chr08:8576388..8576412 (25 bp)
AATACTGGCGCTTCGGTGTGGATGA
LOC_Os08g14320
OsAffx.29194.1.S1_at--96--711Chr08:8576601..8576622 (22 bp)
ATGAGGATGCTTCCAGTGATAGGCA
LOC_Os08g14320
OsAffx.29194.1.S1_at--848--3171Chr08:8576821..8576845 (25 bp)
CAATTGGTACCGTGAGCACTGGCCT
LOC_Os08g14320
OsAffx.29194.1.S1_at--135--1951Chr08:8576838..8576862 (25 bp)
ACTGGCCTTCCAGAGGATGAACTGT
LOC_Os08g14320
OsAffx.29194.1.S1_at--249--7172Chr08:8576869..8576893 (25 bp)
GTCTGAAGAGAATCCACTATGTGCC
LOC_Os08g14320
OsAffx.29194.1.S1_at--855--2031Chr08:8576884..8576908 (25 bp)
ACTATGTGCCCTCAGCTTCAACAAG
LOC_Os08g14320
OsAffx.29194.1.S1_at--1085--8411Chr08:8577416..8577440 (25 bp)
GGCCGAGATGGCGTGCAAGCATTAC
LOC_Os08g14320
OsAffx.29194.1.S1_at--976--131Chr08:8577436..8577460 (25 bp)
ATTACTATCATCTTGCTTGCATCCA
LOC_Os08g14320
OsAffx.29194.1.S1_at--532--3631Chr08:8577451..8577475 (25 bp)
CTTGCATCCAACAATGGCTTCGGCA
LOC_Os08g14320
Target Sequence 
GATTTGCAAGGACCTACCGGTAGGTTTGTTTCTCAAAGCTTGTTGAGACATAGAAGCAGAAATCAAGAAGAACCAGTATC
TCATTTGGAAAACAGTTTGAATGACTCCACTGAATACTGGCGCTTCGGTGTGGATGAAAGTGATGAGGATGCTTCCAGTG
ATAGGCATAGAGGAATGAGAATGGACATCGACGACATGTCTTATGAGGAATTGCTTGCTCTAGGGGAAACAATTGGTACC
GTGAGCACTGGCCTTCCAGAGGATGAACTGTCAAATTGTCTGAAGAGAATCCACTATGTGCCCTCAGCTTCAACAAGTCA
TGAAGATGGTGATATCAAATGCATAATATGCCAGGAGGAATATTTACCTGCCGAGGAGGTGGCCGAGATGGCGTGCAAGC
ATTACTATCATCTTGCTTGCATCCAACAATGGCTTCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis