Browse Element(s) Details


OsAffx.16991.1.S1_at

Description tigr:9631.m02827
TID=OsAffx.16991.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g143001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14250NANA8+8533940..8539012retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g14260NANA8+8545154..8545711retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g14270NANA8+8546181..8546846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g14280Os.40855.2.S1_x_at10/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.45796.1.S1_at6/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.40855.4.S1_x_at3/118+8550632..8552119hypothetical protein
LOC_Os08g14280OsAffx.14669.1.S1_at1/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.40360.1.S1_x_at1/118+8550632..8552119hypothetical protein
LOC_Os08g14280Os.40855.4.S1_at1/118+8550632..8552119hypothetical protein
LOC_Os08g14290NANA8+8554317..8558120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g14300OsAffx.16991.1.S1_at1/118+8558685..8559002hypothetical protein
LOC_Os08g14310NANA8+8564560..8568309hypothetical protein
LOC_Os08g14320OsAffx.29194.1.S1_at11/118+8575718..8577527Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g14330Os.39978.1.S1_at11/118+8582702..8588027Possible apospory-associated protein C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16991.1.S1_at--1096--2551Chr03:16437610..16437634 (25 bp)
AACGGCCAACGACAGGCTTCCTCAG
NONE
OsAffx.16991.1.S1_at--891--2591Chr03:16437603..16437627 (25 bp)
AACGACAGGCTTCCTCAGCGTGGAT
NONE
OsAffx.16991.1.S1_at--939--2111Chr03:16437599..16437623 (25 bp)
ACAGGCTTCCTCAGCGTGGATCCGG
NONE
OsAffx.16991.1.S1_at--483--3951Chr03:16437567..16437591 (25 bp)
CGGCAAGCGGCTGGTCTACATTGGC
NONE
OsAffx.16991.1.S1_at--43--5171Chr03:16437565..16437589 (25 bp)
GCAAGCGGCTGGTCTACATTGGCGT
NONE
OsAffx.16991.1.S1_at--957--3931Chr03:16437560..16437584 (25 bp)
CGGCTGGTCTACATTGGCGTGGATC
NONE
OsAffx.16991.1.S1_at--468--8331Chr03:16437559..16437583 (25 bp)
GGCTGGTCTACATTGGCGTGGATCC
NONE
OsAffx.16991.1.S1_at--762--3891Chr03:16437557..16437581 (25 bp)
CTGGTCTACATTGGCGTGGATCCGG
NONE
OsAffx.16991.1.S1_at--68--8371Chr03:16437536..16437555 (20 bp)
GGCGGGCCATGAGCGGCTAGTGACT
NONE
OsAffx.16991.1.S1_at--683--691NONE
ATGAGCGGCTAGTGACTCGGGTGGC
NONE
OsAffx.16991.1.S1_at--608--3371Chr08:8558755..8558779 (25 bp)
CACCTAGCGGGCATGATAGAGAGAG
LOC_Os08g14300
Target Sequence 
AACGGCCAACGACAGGCTTCCTCAGCGTGGATCCGGCGGCGGGCGGCAAGCGGCTGGTCTACATTGGCGTGGATCCGGTG
GCGGGCCATGAGCGGCTAGTGACTCGGGTGGCGGTCTGTGGTGGACCGGGGAAGGAGGCGGCGCACCACGTGGTGTTGAC
GTGGCGCCGACGTGGCGCACACGTGGCAGCCACGCGGGCGGCTGAACCGACGGCGGCGGGAGCGTGCGGCCAGCGCGCAC
GGGTGGCTCAAGCCGGCCCGGCGGCCATGGCGCACGGCGGCGCTACCGCGGGGCGNCGNCGGCAAANNGCGGNGACCNAC
GGCGAGCGNCGGCGGNGNGACCCCGAGCNGCAAGGGGNNGCGGCGCTAGNAGGNGAGGGGAAGGACGANGGGGTTCTNAC
CGAGGATTCGGCCGGCATGGAGGGGCNACGGCGAACGGCGGCGAGGAATGACCNGGAGGCGACGACGAACGGCGGACGGT
CTCCGNAACCACCTAGCGGGCATGATAGAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis