Browse Element(s) Details


Os.39978.1.S1_at

Description gb:CR288619
DB_XREF= gi:44675185
DB_XREF=CR288619
CLONE=y816a11p3
TID=Os.39978.1
CNT=19
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39978 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_200543.1 (A.thaliana) apospory-associated protein C (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1433011/11Possible apospory-associated protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14290NANA8+8554317..8558120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g14300OsAffx.16991.1.S1_at1/118+8558685..8559002hypothetical protein
LOC_Os08g14310NANA8+8564560..8568309hypothetical protein
LOC_Os08g14320OsAffx.29194.1.S1_at11/118+8575718..8577527Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g14330Os.39978.1.S1_at11/118+8582702..8588027Possible apospory-associated protein C, putative, expressed
LOC_Os08g14340NANA8+8591905..8596146retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14350OsAffx.29196.1.S1_at11/118+8598664..8599374hypothetical protein
LOC_Os08g14360OsAffx.5813.1.S1_x_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.55633.1.A1_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.8093.2.S1_x_at1/118+8607417..8609356expressed protein
LOC_Os08g14364Os.54755.1.S1_at9/118+8609377..8611503expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39978.1.S1_at--511--7691Chr08:8583187..8583211 (25 bp)
GGGTACCTCCGAAATAACAGACTGT
LOC_Os08g14330
Os.39978.1.S1_at--766--1371Chr08:8583144..8583168 (25 bp)
AGAGCGGATCATCTCCTTGGTGAAT
LOC_Os08g14330
Os.39978.1.S1_at--1110--4311Chr08:8583097..8583121 (25 bp)
CCATTCGTGCCCTGGTGATATGATT
LOC_Os08g14330
Os.39978.1.S1_at--71--6571Chr08:8583076..8583100 (25 bp)
GATTCATCGTCCATATTCCAGGAAA
LOC_Os08g14330
Os.39978.1.S1_at--562--8151Chr08:8583056..8583080 (25 bp)
GGAAATATTCGCCATGCTGCATAAG
LOC_Os08g14330
Os.39978.1.S1_at--198--2891Chr08:8583034..8583058 (25 bp)
AAGGTCCGTAGCATTCTCAGTTAAT
LOC_Os08g14330
Os.39978.1.S1_at--746--1931Chr08:8582975..8582999 (25 bp)
ACTGGCTTGCTACTGTGCTTCAAAG
LOC_Os08g14330
Os.39978.1.S1_at--1087--2351Chr08:8582954..8582978 (25 bp)
AAAGCCTAGTTCTTTGCCTCCTTGT
LOC_Os08g14330
Os.39978.1.S1_at--275--1971Chr08:8582855..8582879 (25 bp)
ACTGTTTTGAGTCGCCTTGGGTAAG
LOC_Os08g14330
Os.39978.1.S1_at--583--3271Chr08:8582777..8582801 (25 bp)
CAAACGGGTTCGTCCAACTGGCTGG
LOC_Os08g14330
Os.39978.1.S1_at--791--5391Chr08:8582747..8582771 (25 bp)
GAAGCATGTGCCATCTGTCATTTGA
LOC_Os08g14330
Target Sequence 
GGGTACCTCCGAAATAACAGACTGTGCCACCTGCTTCGACCCTAGAGCGGATCATCTCCTTGGTGAATGAATTCGACCAG
TGGACACAAGCCATTCGTGCCCTGGTGATATGATTCATCGTCCATATTCCAGGAAATATTCGCCATGCTGCATAAGGTCC
GTAGCATTCTCAGTTAATCTGTAGTTATGATCATTGGGAGCATTTGAGTTACACTGGCTTGCTACTGTGCTTCAAAGCCT
AGTTCTTTGCCTCCTTGTGCAAACGCCTCTAAAGAATGATGTCAGGTGCAGCTAGTAGTAATATGTTGTCAATACATGAG
AATTGAGTATCGACTGTTTTGAGTCGCCTTGGGTAAGGCCCAGTTTGGATCAAAGCATATTTTGCATGAGTTCATGANAN
NNNTGCGTTCCAAACGGGTTCGTCCAACTGGCTGGAGGAGGAAGCATGTGCCATCTGTCATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis