Browse Element(s) Details


Os.5613.2.S1_x_at

Description gb:AK068554.1
DB_XREF= gi:32978571
TID=Os.5613.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155B11, full insert sequence.
FL= gb:AK068554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1444011/11ACT domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14410OsAffx.16994.1.S1_at11/118+8639813..8640190hypothetical protein
LOC_Os08g14420NANA8+8647643..8647846hypothetical protein
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein
LOC_Os08g14440Os.5613.2.S1_x_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14440Os.5613.1.S1_s_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14450Os.27634.1.S1_at11/118+8671612..8675214Sigma-70 region 2 family protein, expressed
LOC_Os08g14460Os.47334.1.S1_at11/118+8675237..8680095expressed protein
LOC_Os08g14470NANA8+8683308..8689463transposon protein, putative, unclassified
LOC_Os08g14480NANA8+8690093..8693327transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5613.2.S1_x_at--585--211Chr08:8663317..8663422 (25 bp)
ATTTGACACTGAGGGCCTACTGGCT
LOC_Os08g14440
Os.5613.2.S1_x_at--689--7551Chr08:8663305..8663329 (25 bp)
GGGCCTACTGGCTAAAGCAAAATTC
LOC_Os08g14440
Os.5613.2.S1_x_at--170--2351Chr08:8663292..8663316 (25 bp)
AAAGCAAAATTCCATGTCAGTTATA
LOC_Os08g14440
Os.5613.2.S1_x_at--1018--7811Chr08:8663265..8663289 (25 bp)
GGTAAACCATTGATCAAAGCCTTGC
LOC_Os08g14440
Os.5613.2.S1_x_at--1024--2351Chr08:8663059..8663274 (25 bp)
AAAGCCTTGCAGCAGGTTCTTGCTA
LOC_Os08g14440
Os.5613.2.S1_x_at--855--7891Chr08:8663045..8663069 (25 bp)
GGTTCTTGCTAATAGCTTGCGCTAT
LOC_Os08g14440
Os.5613.2.S1_x_at--367--991Chr08:8662998..8663022 (25 bp)
AGGAGGGCAGTTACTAGGCAGATAA
LOC_Os08g14440
Os.5613.2.S1_x_at--938--5411Chr08:8662794..8662818 (25 bp)
GAAGCCTTCCAAGATTACATGCTAG
LOC_Os08g14440
Os.5613.2.S1_x_at--38--8451Chr08:8662688..8662712 (25 bp)
GGCCATGCATCAACTGTTCTGGTGA
LOC_Os08g14440
Os.5613.2.S1_x_at--880--131Chr08:8662563..8662587 (25 bp)
ATTTTGCTCGGTTCCTAACTGAACT
LOC_Os08g14440
Os.5613.2.S1_x_at--1133--9071Chr08:8662559..8662583 (25 bp)
TGCTCGGTTCCTAACTGAACTTTAA
LOC_Os08g14440
Target Sequence 
ATTTGACACTGAGGGCCTACTGGCTAAAGCAAAATTCCATGTCAGTTATAGGGGTAAACCATTGATCAAAGCCTTGCAGC
AGGTTCTTGCTAATAGCTTGCGCTATTTNTNNTGAGGAGGCCGACGACAGAGGAGGGCAGTTACTAGGCAGATAAATACA
GGAAGCCCCCCACCNTTNAGATACTTTGTGATACATGGATTTGATACCATCATCAAAATTATTCTTGAAATATGCAAACA
ATTTATCAAAAGCTTGGAGGTATACTTGATNTTATGGCTTATACAAATTTAAGCNGTTCCCATTTGAAGGTAGGACATNT
GCTGTNTTAACTGCAGAAGCCTTCCAAGATTACATGCTAGTGCGATTNTCAAGCATGTGACACTTGATAATTTTGGTATT
TAGGATGCATGTTTGATGGTAAATAAGAAAGCAAGTTGGGGGGCCATGCATCAACTGTTCTGGTGAAATGTAGCTGTATT
GTTCTCTCCATTATCTGATTAATAAAGATTACCAATAAATAAATGTGGTGAAANATTTGNCANNTTNNNTGAAAGCATGG
TGCAAATTTTGCTCGGTTCCTAACTGAACTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5613.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis