Browse Element(s) Details


Os.5613.1.S1_s_at

Description gb:AK059049.1
DB_XREF= gi:32969067
TID=Os.5613.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.5613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E01, full insert sequence.
FL= gb:AK059049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1444011/11ACT domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14410OsAffx.16994.1.S1_at11/118+8639813..8640190hypothetical protein
LOC_Os08g14420NANA8+8647643..8647846hypothetical protein
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein
LOC_Os08g14440Os.5613.2.S1_x_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14440Os.5613.1.S1_s_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14450Os.27634.1.S1_at11/118+8671612..8675214Sigma-70 region 2 family protein, expressed
LOC_Os08g14460Os.47334.1.S1_at11/118+8675237..8680095expressed protein
LOC_Os08g14470NANA8+8683308..8689463transposon protein, putative, unclassified
LOC_Os08g14480NANA8+8690093..8693327transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5613.1.S1_s_at--288--3751Chr08:8662836..8662860 (25 bp)
CTGTTCCCATTTGAAGGTAGGACAT
LOC_Os08g14440
Os.5613.1.S1_s_at--581--6691Chr08:8662834..8662858 (25 bp)
GTTCCCATTTGAAGGTAGGACATCT
LOC_Os08g14440
Os.5613.1.S1_s_at--1102--4171Chr08:8662831..8662855 (25 bp)
CCCATTTGAAGGTAGGACATCTGCT
LOC_Os08g14440
Os.5613.1.S1_s_at--1135--3571Chr08:8662829..8662853 (25 bp)
CATTTGAAGGTAGGACATCTGCTGT
LOC_Os08g14440
Os.5613.1.S1_s_at--151--2111Chr08:8662778..8662802 (25 bp)
ACATGCTAGTGCGATTCTCAAGCAT
LOC_Os08g14440
Os.5613.1.S1_s_at--304--631Chr08:8662776..8662800 (25 bp)
ATGCTAGTGCGATTCTCAAGCATGT
LOC_Os08g14440
Os.5613.1.S1_s_at--107--9091Chr08:8662775..8662799 (25 bp)
TGCTAGTGCGATTCTCAAGCATGTG
LOC_Os08g14440
Os.5613.1.S1_s_at--340--4871Chr08:8662774..8662798 (25 bp)
GCTAGTGCGATTCTCAAGCATGTGA
LOC_Os08g14440
Os.5613.1.S1_s_at--438--3711Chr08:8662773..8662797 (25 bp)
CTAGTGCGATTCTCAAGCATGTGAC
LOC_Os08g14440
Os.5613.1.S1_s_at--133--10071Chr08:8662772..8662796 (25 bp)
TAGTGCGATTCTCAAGCATGTGACA
LOC_Os08g14440
Os.5613.1.S1_s_at--748--1131Chr08:8662771..8662795 (25 bp)
AGTGCGATTCTCAAGCATGTGACAC
LOC_Os08g14440
Target Sequence 
CTGTTCCCATTTGAAGGTAGGACATCTGCTGTATTAACTGCAGAAGCCTTCCAAGATTACATGCTAGTGCGATTCTCAAG
CATGTGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5613.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis