Browse Element(s) Details


Os.27668.1.S1_at

Description gb:AK071462.1
DB_XREF= gi:32981485
TID=Os.27668.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098M12, full insert sequence.
FL= gb:AK071462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16090Os.40855.5.S1_x_at11/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_at9/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_x_at8/117+9375387..9378722hypothetical protein
LOC_Os07g16090OsAffx.15821.2.S1_at4/117+9375387..9378722hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_x_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16110OsAffx.17914.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.2606.1.S1_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.1436.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16120OsAffx.20387.1.S1_x_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.4941.1.S1_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.29419.3.S1_at1/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16130Os.52325.1.S1_at11/117+9393670..9395830acetyltransferase, GNAT family protein, expressed
LOC_Os07g16140Os.27668.1.S1_at11/117+9397725..9402050expressed protein
LOC_Os07g16150Os.57294.1.S1_at10/117+9404144..9405448expressed protein
LOC_Os07g16160NANA7+9419714..9421604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16170Os.50619.1.S1_at1/117+9423694..9425092hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27668.1.S1_at--436--2431Chr07:9400797..9400821 (25 bp)
AAAAGCCTGTCTGAGTTCCTTAAGA
LOC_Os07g16140
Os.27668.1.S1_at--999--71Chr07:9400832..9400856 (25 bp)
ATTGCCCTGATGATAATAGTCTTAC
LOC_Os07g16140
Os.27668.1.S1_at--495--8711Chr07:9401492..9401516 (25 bp)
TGTCCTGTGCAAGTGTGATGGTCCT
LOC_Os07g16140
Os.27668.1.S1_at--973--4971Chr07:9401656..9401680 (25 bp)
GCATCGTCAGAGCTAGAGGGCTACT
LOC_Os07g16140
Os.27668.1.S1_at--1008--5591Chr07:9401713..9401737 (25 bp)
GACAATGTCATACAACTTGCGTGGC
LOC_Os07g16140
Os.27668.1.S1_at--552--3631Chr07:9401728..9401752 (25 bp)
CTTGCGTGGCAGTTTGTTTCTTAGA
LOC_Os07g16140
Os.27668.1.S1_at--473--6831Chr07:9401743..9401767 (25 bp)
GTTTCTTAGAGGGTCCAAAGCCACT
LOC_Os07g16140
Os.27668.1.S1_at--927--372Chr07:9401784..9401808 (25 bp)
ATCACACATTCACAGTTTCACACAG
LOC_Os07g16140
Os.27668.1.S1_at--887--10311Chr07:9401799..9401823 (25 bp)
TTTCACACAGTGTTGACAGGCAGGT
LOC_Os07g16140
Os.27668.1.S1_at--1012--8251Chr07:9401817..9401841 (25 bp)
GGCAGGTGACTTTCCAATGAGCAGC
LOC_Os07g16140
Os.27668.1.S1_at--171--5031Chr07:9401840..9401864 (25 bp)
GCAGTGGTCATGATAAGCAGCAGCA
LOC_Os07g16140
Target Sequence 
AAAAGCCTGTCTGAGTTCCTTAAGACATATGGATGATTGCCCTGATGATAATAGTCTTACAAATATTTTTTCTGAGGATG
AACAGCAATCTGGGGATTTGCTGGACAAAGCAGTGTCCTGTGCAAGTGTGATGGTCCTGGTTCACAATATGTTAAAACTC
GATTATACGATGCAGGAGAAGATTGTTAAGGCATTATGCATTAAAACAGCATCGTCAGAGCTAGAGGGCTACTGTCAAAT
GTGGGATTTGCGACCATACATCGATGACAATGTCATACAACTTGCGTGGCAGTTTGTTTCTTAGAGGGTCCAAAGCCACT
GGAGAAGATGAAGAGAATCACACATTCACAGTTTCACACAGTGTTGACAGGCAGGTGACTTTCCAATGAGCAGCAGTGGT
CATGATAAGCAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis